listEnsembl {biomaRt} | R Documentation |
This function returns a list of BioMart databases hosted by
Ensembl. To establish a connection use the useEnsembl
function.
listEnsembl(mart = NULL, version = NULL, GRCh = NULL, mirror = NULL, verbose = FALSE) listEnsemblGenomes(includeHosts = FALSE)
mart |
mart object created with the useEnsembl function. This is optional, as you usually use |
version |
Ensembl version to connect to when wanting to connect to an archived Ensembl version |
GRCh |
GRCh version to connect to if not the current GRCh38, currently this can only be 37 |
mirror |
Specify an Ensembl mirror to connect to. The valid options here are 'www', 'uswest', 'useast', 'asia'. If no mirror is specified the primary site at www.ensembl.org will be used. |
verbose |
Give detailed output of what the method is doing, for debugging purposes |
includeHosts |
If this option is set to |
Steffen Durinck, Mike L. Smith
if(interactive()){ listEnsembl() }