APBS¶

Contents

  • Installing APBS
    • Binary installation
    • Source installation
    • What’s in the box?
  • Invoking APBS
    • APBS input files
  • APBS input files
    • READ input file section
    • ELEC input file section
    • APOLAR input file section
    • PRINT input file section
  • Solvation model background
    • Solvation Models
    • Further Reading
  • Caveats and sources of error
    • Model error
    • Parameter set errors
    • Structure-based errors
    • Discretization error
    • Solver and round-off error
  • APBS utilities
    • amber2charmm.sh
    • del2dx
    • dx2mol
    • dx2uhbd
    • qcd2pqr.awk
    • uhbd_asc2bin
    • WHATIF2AMBER.sed
    • benchmark
    • analysis
    • born
    • coulomb
    • dxmath
    • inputgen.py
    • mergedx and mergedx2
    • mgmesh
    • multivalue
    • psize.py
    • similarity
    • smooth
  • APBS programmer’s guide
  • APBS license

Related Topics

  • Documentation overview
    • Previous: PDB2PQR license
    • Next: Installing APBS

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