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PILISIdentification

Performs an ProteinIdentification with PILIS

Experimental classes:
This TOPP-tool is not well tested and not all features might be properly implemented and tested!
pot. predecessor tools $ \longrightarrow $ PILISIdentification $ \longrightarrow $ pot. successor tools
PILISModelTrainer ConsensusID
IDMapper

The PILISIdentification TOPP tool performs a ProteinIdentification run with the PILIS ProteinIdentification engine. As input the file given in the in parameters is used. The identifications are written into an idXML file given in the out parameter. Additionally the model_file must be specified. To perform a search also a peptide database file should be used,given in the peptide_db_file parameter. This should contain a peptide in a separate line, either only the sequence or additionally with weight and charge in the second and third column.

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool:

Todo:
Check for missing precursors (Hiwi)

OpenMS / TOPP release 2.0.0 Documentation generated on Thu Jul 28 2016 00:37:34 using doxygen 1.8.11