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ProteinInference

Computes a protein identification based on the number of identified peptides.

pot. predecessor tools $ \longrightarrow $ ProteinInterference $ \longrightarrow $ pot. successor tools
MascotAdapter (or other ID engines) PeptideIndexer
FalseDiscoveryRate
IDFilter
Experimental classes:
This TOPP-tool is not well tested and not all features might be properly implemented and tested!

This tool counts the peptide sequences that match a protein accession. From this count for all protein hits in the respective id run, only those proteins are accepted that have at least a given number of peptides sequences identified. The peptide identifications should be prefiltered with respect to false discovery rate and the score in general to remove bad identifications.

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 2.0.0 Documentation generated on Thu Jul 28 2016 00:37:34 using doxygen 1.8.11