Package | Description |
---|---|
neurord.disc |
These are various ways of turning a morphology into a set of elements of constrained volume.
|
neurord.model |
These classes represent the model as it is stored in the input files.
|
neurord.numeric.morph |
Representation of the morphology and discretized mesh for computational purposes.
|
Modifier and Type | Method and Description |
---|---|
TreePoint |
SegmentSlicer.findNearest(TreePoint rt,
TreePoint tgt) |
TreePoint[] |
SegmentSlicer.getBalancedSlices(double disqrtr,
int mnp) |
TreePoint[] |
SegmentSlicer.getFixedWidthSlices(double dx,
HashMap<String,Double> resHM) |
Modifier and Type | Method and Description |
---|---|
CurvedVolumeSlice |
DiscSplitter.baseGrid(TreePoint tpa,
TreePoint tpb,
String lbl) |
VolumeSlice |
DiscBoxer.baseGrid(TreePoint tpa,
TreePoint tpb,
String lbl) |
static VolumeGrid |
LineBoxer.buildGrid(TreePoint[] srcPoints,
double[] surfaceLayers,
double depth,
double d,
HashMap<String,Double> resHM) |
static VolumeGrid |
TreeBoxDiscretizer.buildGrid(TreePoint[] srcPoints,
double d,
HashMap<String,Double> resHM,
double[] surfaceLayers,
VolumeGrid.geometry_t geom,
double d2d) |
TreePoint |
SegmentSlicer.findNearest(TreePoint rt,
TreePoint tgt) |
double |
Resolution.getLocalDelta(TreePoint cpa,
TreePoint cpb) |
static void |
TreeUtil.orientAC(TreePoint base,
TreePoint[] srcPoints) |
static void |
TreeUtil.orientAC(TreePoint base,
TreePoint[] srcPoints) |
static void |
TreeUtil.parentizeFrom(TreePoint base,
TreePoint[] srcPoints) |
static void |
TreeUtil.parentizeFrom(TreePoint base,
TreePoint[] srcPoints) |
void |
CurvedVolumeSlice.subPlaneConnect(TreePoint tp,
TreePoint tpn,
CurvedVolumeSlice vg,
double partBranchOffset) |
Constructor and Description |
---|
DiscBoxer(TreePoint[] pts,
double[] sl) |
DiscSplitter(TreePoint[] pts,
double d,
HashMap<String,Double> resHM,
double[] sl,
double mar) |
SegmentSlicer(TreePoint[] sp) |
TreeCurvedElementDiscretizer(TreePoint[] points) |
Modifier and Type | Method and Description |
---|---|
TreePoint[] |
Morphology.getTreePoints() |
TreePoint |
MorphPoint.toTreePoint() |
Modifier and Type | Field and Description |
---|---|
TreePoint[] |
TreePoint.nbr |
TreePoint |
TreePoint.parent |
TreePoint |
TreePoint.subAreaPeer |
Modifier and Type | Method and Description |
---|---|
TreePoint |
TreePoint.getParent() |
TreePoint |
TreePoint.largestNeighborNot(TreePoint cpb) |
TreePoint |
TreePoint.makeCopy() |
TreePoint |
TreePoint.oppositeNeighbor(TreePoint tpp) |
Modifier and Type | Method and Description |
---|---|
ArrayList<TreePoint> |
TreePoint.getNeighbors() |
ArrayList<TreePoint> |
TreePoint.getOffsetChildren() |
Modifier and Type | Method and Description |
---|---|
void |
TreePoint.addNeighbor(TreePoint cpn) |
void |
TreePoint.addOffsetChild(TreePoint p) |
void |
TreePoint.alignTop(TreePoint tpon,
TreePoint tpdir,
double offset) |
double |
TreePoint.distanceTo(TreePoint cp) |
boolean |
TreePoint.hasNeighbor(TreePoint cp) |
TreePoint |
TreePoint.largestNeighborNot(TreePoint cpb) |
void |
TreePoint.locateBetween(TreePoint cpa,
TreePoint cpb,
double f) |
void |
TreePoint.movePerp(TreePoint ca,
TreePoint cb,
double dperp) |
static void |
TreePoint.neighborize(TreePoint tp,
TreePoint tpn) |
TreePoint |
TreePoint.oppositeNeighbor(TreePoint tpp) |
String |
TreePoint.regionClassWith(TreePoint tp) |
void |
TreePoint.removeNeighbor(TreePoint cp) |
void |
TreePoint.replaceNeighbor(TreePoint cp,
TreePoint cr) |
String |
TreePoint.segmentIDWith(TreePoint tp) |
void |
TreePoint.setIDWith(TreePoint point,
String s) |
void |
TreePoint.setRegionWith(TreePoint point,
String s) |
void |
TreePoint.setSubAreaOf(TreePoint cpa) |
void |
VolumeLine.subPlaneConnect(TreePoint tp,
TreePoint tpl,
VolumeLine tgt,
double offset) |
void |
VolumeSlice.subPlaneConnect(TreePoint tp,
TreePoint tpn,
VolumeSlice vg,
double pborel) |
Constructor and Description |
---|
TreeWriter(TreePoint[] tpa) |
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