Package | Description |
---|---|
neurord.disc |
These are various ways of turning a morphology into a set of elements of constrained volume.
|
neurord.model |
These classes represent the model as it is stored in the input files.
|
neurord.numeric.grid |
SteppedStochasticCalc contains the particle number based calculation with fixed timesteps
where a number of diffusion events and reactions is generated for each reaction, volume and
volume-volume connection at each timestep.
|
Modifier and Type | Method and Description |
---|---|
VolumeGrid |
DiscSplitter.buildGrid() |
VolumeGrid |
DiscBoxer.buildGrid(double d,
HashMap<String,Double> resHM) |
VolumeGrid |
TreeCurvedElementDiscretizer.buildGrid(double d,
HashMap<String,Double> resHM,
double[] surfaceLayers,
double mar) |
static VolumeGrid |
LineBoxer.buildGrid(TreePoint[] srcPoints,
double[] surfaceLayers,
double depth,
double d,
HashMap<String,Double> resHM) |
static VolumeGrid |
TreeBoxDiscretizer.buildGrid(TreePoint[] srcPoints,
double d,
HashMap<String,Double> resHM,
double[] surfaceLayers,
VolumeGrid.geometry_t geom,
double d2d) |
Modifier and Type | Method and Description |
---|---|
static void |
SpineLocator.locate(int spineSeed,
SpineDistribution dist,
double delta,
VolumeGrid grid) |
Modifier and Type | Method and Description |
---|---|
VolumeGrid |
SDRun.getVolumeGrid() |
Modifier and Type | Method and Description |
---|---|
protected void |
ResultWriterHDF5._writeGrid(VolumeGrid vgrid,
double startTime,
IGridCalc source) |
protected void |
ResultWriterHDF5.Trial._writeGrid(VolumeGrid vgrid,
double startTime,
IGridCalc source) |
static NextEventQueue |
NextEventQueue.create(int[][] particles,
RandomGenerator random,
StepGenerator stepper,
VolumeGrid grid,
ReactionTable rtab,
StimulationTable stimtab,
boolean adaptive,
double tolerance,
double leap_min_jump,
boolean verbose,
String statistics) |
void |
ResultWriterText.writeGrid(VolumeGrid vgrid,
double startTime,
IGridCalc source) |
void |
ResultWriterHDF5.writeGrid(VolumeGrid vgrid,
double startTime,
IGridCalc source) |
void |
ResultWriter.writeGrid(VolumeGrid vgrid,
double startTime,
IGridCalc source) |
Constructor and Description |
---|
ResultWriterHDF5(File output,
IOutputSet primary,
List<? extends IOutputSet> outputSets,
String[] species,
VolumeGrid grid) |
ResultWriterText(File output,
IOutputSet primary,
List<? extends IOutputSet> outputSets,
String[] species,
VolumeGrid grid,
boolean writeConcentration) |
Copyright © 2018. All rights reserved.