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Digestor

Digests a protein database in-silico.

pot. predecessor tools $ \longrightarrow $ Digestor $ \longrightarrow $ pot. successor tools
none (FASTA input) IDFilter (peptide blacklist)

This application is used to digest a protein database to get all peptides given a cleavage enzyme. At the moment only trypsin is supported.

The output can be used as a blacklist filter input to IDFilter, to remove certain peptides.

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 2.3.0 Documentation generated on Fri Jan 5 2018 22:32:31 using doxygen 1.8.13