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TOPPMetaProSIP Member List

This is the complete list of members for TOPPMetaProSIP, including all inherited members.

ADDITIONAL_ISOTOPESTOPPMetaProSIPprotected
calculateCorrelation(Size n_element, const vector< double > &isotopic_intensities, IsotopePatterns patterns, MapRateToScoreType &map_rate_to_correlation_score, String labeling_element, double mass, double min_correlation_distance_to_averagine)TOPPMetaProSIPinlineprotected
calculateGlobalLR(const vector< double > &isotopic_intensities)TOPPMetaProSIPinlineprotected
extractIncorporationsAtCorrelationMaxima(SIPPeptide &sip_peptide, const IsotopePatterns &patterns, double weight_merge_window=5.0, double min_corr_threshold=0.5, double min_decomposition_weight=10.0)TOPPMetaProSIPinlineprotected
extractIncorporationsAtHeighestDecompositionWeights(SIPPeptide &sip_peptide, const IsotopePatterns &patterns, double weight_merge_window=5.0, double min_corr_threshold=0.5, double min_low_RIA_threshold=-1, double min_decomposition_weight=10.0)TOPPMetaProSIPinlineprotected
extractIsotopicIntensities(Size element_count, double mass_diff, double mz_tolerance_ppm, double seed_rt, double seed_mz, double seed_charge, const PeakMap &peak_map)TOPPMetaProSIPinlineprotected
extractPeakSpectrum(Size element_count, double mass_diff, double rt, double feature_hit_theoretical_mz, Int feature_hit_charge, const PeakMap &peak_map)TOPPMetaProSIPinlineprotected
FEATURE_STRINGTOPPMetaProSIPprotected
filterIsotopicIntensities(vector< double >::const_iterator &pattern_begin, vector< double >::const_iterator &pattern_end, vector< double >::const_iterator &intensities_begin, vector< double >::const_iterator &intensities_end, double TIC_threshold=0.99)TOPPMetaProSIPinlineprotected
findApexRT(const FeatureMap::iterator feature_it, double hit_rt, const PeakMap &peak_map, Size n_scans)TOPPMetaProSIPinlineprotected
getBestRateScorePair(const MapRateToScoreType &map_rate_to_score, double &best_rate, double &best_score)TOPPMetaProSIPinlineprotected
isotopicIntensitiesToSpectrum(double mz_start, double mass_diff, Int charge, vector< double > isotopic_intensities)TOPPMetaProSIPinlineprotected
main_(int, const char **)TOPPMetaProSIPinlineprotected
mergeSpectra(const PeakMap &to_merge)TOPPMetaProSIPinlineprotected
normalizeToMax(const MapRateToScoreType &map_rate_to_decomposition_weight)TOPPMetaProSIPinlineprotected
registerOptionsAndFlags_()TOPPMetaProSIPinlineprotected
TOPPMetaProSIP()TOPPMetaProSIPinline
UNASSIGNED_ID_STRINGTOPPMetaProSIPprotected
UNIDENTIFIED_STRINGTOPPMetaProSIPprotected
writePeakIntensities_(SVOutStream &out_stream, vector< double > isotopic_intensities, bool write_13Cpeaks)TOPPMetaProSIPinlineprotected

OpenMS / TOPP release 2.3.0 Documentation generated on Sun Jan 7 2018 03:49:06 using doxygen 1.8.13