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IDFilter

Filters protein identification engine results by different criteria.

potential predecessor tools $ \longrightarrow $ IDFilter $ \longrightarrow $ potential successor tools
MascotAdapter (or other ID engines) PeptideIndexer
IDFileConverter ProteinInference
FalseDiscoveryRate IDMapper
ConsensusID

This tool is used to filter the identifications found by a peptide/protein identification tool like Mascot. Different filters can be applied:

To enable any of the filters, just change their default value. All active filters will be applied in order.

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 2.0.0 Documentation generated on Sat Feb 20 2016 12:42:28 using doxygen 1.8.10