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PILISSpectraGenerator

Generate spectra given a list of peptides and a PILIS model

Experimental classes:
This TOPP-tool is not well tested and not all features might be properly implemented and tested!
pot. predecessor tools $ \longrightarrow $ PILISSpectraGenerator $ \longrightarrow $ pot. successor tools
MascotAdapter (or other ID engines) PILISIdentification
PILISModelTrainer

This tool generates spectra given a set of peptides and a PILIS model. The list of peptides must be given as idXML files. The peptides are used to generate spectra. Additionally a model file must be given, which contains the fragmentation model and its parameters. If a peptide has charge 0, spectra for all charges from 'min_charge' to 'max_charge' are generated.

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 2.0.0 Documentation generated on Mon Feb 1 2016 12:49:50 using doxygen 1.8.10