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MetaProSIPReporting Class Reference

Static Public Member Functions

static void plotHeatMap (const String &output_dir, const String &tmp_path, const String &file_suffix, const String &file_extension, const vector< vector< double > > &binned_ria, vector< String > class_labels, Size debug_level=0)
 
static void plotFilteredSpectra (const String &output_dir, const String &tmp_path, const String &file_suffix, const String &file_extension, const vector< SIPPeptide > &sip_peptides, Size debug_level=0)
 
static void writeHTML (const String &qc_output_directory, const String &file_suffix, const String &file_extension, const vector< SIPPeptide > &sip_peptides)
 
static void plotScoresAndWeights (const String &output_dir, const String &tmp_path, const String &file_suffix, const String &file_extension, const vector< SIPPeptide > &sip_peptides, double score_plot_yaxis_min, Size debug_level=0)
 
static void createQualityReport (String tmp_path, String qc_output_directory, String file_suffix, const String &file_extension, const vector< vector< SIPPeptide > > &sip_peptide_cluster, Size n_heatmap_bins, double score_plot_y_axis_min, bool report_natural_peptides)
 
static void createCSVReport (vector< vector< SIPPeptide > > &sippeptide_cluster, ofstream &os, map< String, String > &proteinid_to_description)
 
static void createPeptideCentricCSVReport (const String in_mzML, const String &file_extension, vector< vector< SIPPeptide > > &sippeptide_cluster, ofstream &os, map< String, String > &proteinid_to_description, String qc_output_directory, String file_suffix, bool report_natural_peptides)
 

Static Protected Member Functions

static void createBinnedPeptideRIAData_ (const Size n_heatmap_bins, const vector< vector< SIPPeptide > > &sip_clusters, vector< vector< double > > &binned_peptide_ria, vector< String > &cluster_labels)
 

Member Function Documentation

static void createBinnedPeptideRIAData_ ( const Size  n_heatmap_bins,
const vector< vector< SIPPeptide > > &  sip_clusters,
vector< vector< double > > &  binned_peptide_ria,
vector< String > &  cluster_labels 
)
inlinestaticprotected
static void createCSVReport ( vector< vector< SIPPeptide > > &  sippeptide_cluster,
ofstream &  os,
map< String, String > &  proteinid_to_description 
)
inlinestatic
static void createPeptideCentricCSVReport ( const String  in_mzML,
const String &  file_extension,
vector< vector< SIPPeptide > > &  sippeptide_cluster,
ofstream &  os,
map< String, String > &  proteinid_to_description,
String  qc_output_directory,
String  file_suffix,
bool  report_natural_peptides 
)
inlinestatic
static void createQualityReport ( String  tmp_path,
String  qc_output_directory,
String  file_suffix,
const String &  file_extension,
const vector< vector< SIPPeptide > > &  sip_peptide_cluster,
Size  n_heatmap_bins,
double  score_plot_y_axis_min,
bool  report_natural_peptides 
)
inlinestatic

Referenced by TOPPMetaProSIP::main_().

static void plotFilteredSpectra ( const String &  output_dir,
const String &  tmp_path,
const String &  file_suffix,
const String &  file_extension,
const vector< SIPPeptide > &  sip_peptides,
Size  debug_level = 0 
)
inlinestatic
static void plotHeatMap ( const String &  output_dir,
const String &  tmp_path,
const String &  file_suffix,
const String &  file_extension,
const vector< vector< double > > &  binned_ria,
vector< String >  class_labels,
Size  debug_level = 0 
)
inlinestatic
static void plotScoresAndWeights ( const String &  output_dir,
const String &  tmp_path,
const String &  file_suffix,
const String &  file_extension,
const vector< SIPPeptide > &  sip_peptides,
double  score_plot_yaxis_min,
Size  debug_level = 0 
)
inlinestatic
static void writeHTML ( const String &  qc_output_directory,
const String &  file_suffix,
const String &  file_extension,
const vector< SIPPeptide > &  sip_peptides 
)
inlinestatic

OpenMS / TOPP release 2.0.0 Documentation generated on Mon Feb 1 2016 12:49:50 using doxygen 1.8.10