public interface JmolNode
Modifier and Type | Method and Description |
---|---|
BS |
findAtomsLike(java.lang.String substring) |
int |
getAtomicAndIsotopeNumber() |
java.lang.String |
getAtomName() |
int |
getAtomSite() |
java.lang.String |
getAtomType() |
java.lang.String |
getBioStructureTypeName() |
int |
getBondedAtomIndex(int j) |
int |
getChainID() |
java.lang.String |
getChainIDStr() |
int |
getCovalentBondCount() |
int |
getCovalentHydrogenCount() |
boolean |
getCrossLinkLeadAtomIndexes(JmolList<java.lang.Integer> vReturn) |
JmolEdge[] |
getEdges() |
int |
getElementNumber() |
int |
getFormalCharge() |
java.lang.String |
getGroup1(char c0) |
java.lang.String |
getGroup3(boolean allowNull) |
void |
getGroupBits(BS bs) |
int |
getImplicitHydrogenCount() |
int |
getIndex() |
int |
getIsotopeNumber() |
int |
getModelIndex() |
int |
getOffsetResidueAtom(java.lang.String name,
int offset) |
int |
getResno() |
int |
getValence() |
boolean |
isCrossLinked(JmolNode node) |
boolean |
isDeleted() |
boolean |
isDna() |
boolean |
isLeadAtom() |
boolean |
isNucleic() |
boolean |
isProtein() |
boolean |
isPurine() |
boolean |
isPyrimidine() |
boolean |
isRna() |
void |
set(float x,
float y,
float z) |
void set(float x, float y, float z)
int getAtomSite()
int getBondedAtomIndex(int j)
int getCovalentHydrogenCount()
JmolEdge[] getEdges()
int getElementNumber()
int getFormalCharge()
int getIndex()
int getIsotopeNumber()
int getModelIndex()
int getValence()
int getCovalentBondCount()
int getImplicitHydrogenCount()
int getAtomicAndIsotopeNumber()
java.lang.String getAtomName()
java.lang.String getBioStructureTypeName()
java.lang.String getGroup1(char c0)
java.lang.String getGroup3(boolean allowNull)
int getResno()
int getChainID()
java.lang.String getChainIDStr()
int getOffsetResidueAtom(java.lang.String name, int offset)
boolean getCrossLinkLeadAtomIndexes(JmolList<java.lang.Integer> vReturn)
void getGroupBits(BS bs)
boolean isLeadAtom()
boolean isCrossLinked(JmolNode node)
boolean isProtein()
boolean isNucleic()
boolean isDna()
boolean isRna()
boolean isPurine()
boolean isPyrimidine()
boolean isDeleted()
java.lang.String getAtomType()
BS findAtomsLike(java.lang.String substring)