Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.
The command line parameters of this tool are:
INI file documentation of this tool:
OpenMS / TOPP release 2.2.0
Documentation generated on Mon Jul 31 2017 17:37:02 using doxygen 1.8.13