Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
IDEvaluator

Computes a 'q-value vs. #PSM' plot which is saved as an image to visualize the number identifications for a certain q-value.

An arbitrary number of idXML files resulting from a target+decoy search can be provided as input.

Since the q-value can be computed independently from a scoring scheme, no further preprocessing (like IDPep or FDR) is required, apart from a target-decoy annotation! I.e., apply PeptideIndexer to the immediate output of a search engine (or ConsensusID) and use this as input to this tool.

Note
Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 2.2.0 Documentation generated on Mon Jul 31 2017 17:37:02 using doxygen 1.8.13