- AboutDialog - Class in jspecview.application
-
The About Dialog
class is the help | about window for the
JSpecView.
- accept(File) - Method in class jspecview.common.JSVFileFilter
-
Implementation of method from interface FileFilter
.
- addAnnotation(List<String>) - Method in class jspecview.common.PanelData
-
- addDialog(int, Annotation.AType, AnnotationData) - Method in class jspecview.common.PanelData
-
- addExtension(String) - Method in class jspecview.common.JSVFileFilter
-
Adds an extension to the JSpecViewFileFilter
- addHeader(List<String[]>, String, String) - Static method in class jspecview.source.FileReader
-
- addHighlight(double, double, int, int, int, int) - Method in class jspecview.applet.JSVApplet
-
- addHighlight(double, double, int, int, int, int) - Method in class jspecview.applet.JSVAppletPrivate
-
Method that can be called from another applet or from javascript that adds
a highlight to a portion of the plot area of a JSVPanel
- addHighlight(double, double, int, int, int, int) - Method in class jspecview.application.MainFrame
-
- addHighlight(double, double, int, int, int, int) - Method in interface jspecview.common.JSVAppletInterface
-
Method that can be called from another applet or from javascript that adds
a highlight to a portion of the plot area of a JSVPanel
- addHighLight(ScriptInterface, double, double, int, int, int, int) - Static method in class jspecview.common.JSViewer
-
- addHighlight(GraphSet, double, double, JDXSpectrum, int, int, int, int) - Method in class jspecview.common.PanelData
-
Add information about a region of the displayed spectrum to be highlighted
applet only right now
- addIntegralRegion(double, double) - Method in class jspecview.common.IntegralData
-
- addJDXSpectrum(String, JDXSpectrum, boolean) - Method in class jspecview.source.JDXSource
-
Adds a Spectrum to the list
- addListener(PanelListener) - Method in class jspecview.common.PanelData
-
- addMarks(String) - Method in class jspecview.common.IntegralData
-
INTEGRATION MARK list
where list is a comma-separated list of ppm1-ppm2
with :x.x added to normalize one of them
and starting with 0-0 clears the integration
- addPeakHighlight(PeakInfo) - Method in class jspecview.common.PanelData
-
- addSpecShift(double) - Method in class jspecview.common.Annotation
-
- addSpecShift(double) - Method in interface jspecview.common.AnnotationData
-
- addSpecShift(double) - Method in class jspecview.common.IntegralData
-
- addSpecShift(double) - Method in class jspecview.common.Measurement
-
- addSpecShift(double) - Method in class jspecview.common.MeasurementData
-
- addSubSpectrum(JDXSpectrum, boolean) - Method in class jspecview.common.JDXSpectrum
-
adds an nD subspectrum and titles it "Subspectrum "
These spectra can be iterated over using the UP and DOWN keys.
- addToList(int, List<JDXSpectrum>) - Method in class jspecview.common.PanelData
-
- advanceSubSpectrum(int) - Method in class jspecview.common.JDXSpectrum
-
- advanceSubSpectrum(int) - Method in class jspecview.common.PanelData
-
- allowSubSpec(JDXSpectrum, JDXSpectrum) - Static method in class jspecview.common.JDXSpectrum
-
- Annotation - Class in jspecview.common
-
The Annotation
class stores the spectral x and pixel y values of an
annotation text along with its text
- Annotation(JDXSpectrum, double, double, String, boolean, boolean, int, int) - Constructor for class jspecview.common.Annotation
-
Constructor -- note that x is spectral X value, but y is pixels above
baseline
- Annotation(JDXSpectrum, double, double) - Constructor for class jspecview.common.Annotation
-
- Annotation.AType - Enum in jspecview.common
-
- AnnotationData - Interface in jspecview.common
-
- AnnotationDialog - Interface in jspecview.common
-
- applyScale(Coordinate[], double, double) - Static method in class jspecview.common.Coordinate
-
Apply the scale factor to the coordinates
- applyShiftReference(Coordinate[], int, double, double, double, double, int) - Static method in class jspecview.common.Coordinate
-
Applies the shift reference to all coordinates
- AppMenu - Class in jspecview.application
-
The Main Class or Entry point of the JSpecView Application.
- AppMenu(MainFrame, AwtPopupMenu) - Constructor for class jspecview.application.AppMenu
-
- AppToolBar - Class in jspecview.application
-
- AppToolBar(MainFrame) - Constructor for class jspecview.application.AppToolBar
-
- areLinkableX(JDXSpectrum, JDXSpectrum) - Static method in class jspecview.common.JDXSpectrum
-
- areLinkableY(JDXSpectrum, JDXSpectrum) - Static method in class jspecview.common.JDXSpectrum
-
- areXScalesCompatible(JDXSpectrum, JDXSpectrum, boolean, boolean) - Static method in class jspecview.common.JDXSpectrum
-
- arrayCopy(int[], int, int, boolean) - Static method in class jspecview.util.ArrayUtil
-
- ArrayUtil - Class in jspecview.util
-
- ArrayUtil() - Constructor for class jspecview.util.ArrayUtil
-
- asPDF - Variable in class jspecview.common.PrintLayout
-
- autoIntegrate() - Method in class jspecview.common.IntegralData
-
- autoSelectOnLoad() - Method in class jspecview.common.PeakInfo
-
a spectrum which, when loaded, should fire a message to load first peak --
GC for now
- awaken(boolean) - Method in class jspecview.application.MainFrame
-
- AwtColoredAnnotation - Class in jspecview.common
-
ColoredAnnotation is a label on the spectrum; not an integralRegion
- AwtColoredAnnotation(JDXSpectrum, double, double, String, Color, boolean, boolean, int, int) - Constructor for class jspecview.common.AwtColoredAnnotation
-
- AwtDialog - Class in jspecview.common
-
- AwtDialog() - Constructor for class jspecview.common.AwtDialog
-
- AwtOverlayLegendDialog - Class in jspecview.common
-
Dialog for showing the legend or key for overlaid plots in a
JSVPanel
.
- AwtOverlayLegendDialog(Frame, JSVPanel) - Constructor for class jspecview.common.AwtOverlayLegendDialog
-
Initialises a non-modal OverlayLegendDialog
with a default
title of "Legend: " + jsvp.getTitle() and parent frame
- AwtPanel - Class in jspecview.common
-
JSVPanel class represents a View combining one or more GraphSets, each with one or more JDXSpectra.
- AwtPanel(ScriptInterface, JDXSpectrum, AwtPopupMenu) - Constructor for class jspecview.common.AwtPanel
-
Constructs a new JSVPanel
- AwtPanel.RequestThread - Class in jspecview.common
-
- AwtPanel.RequestThread() - Constructor for class jspecview.common.AwtPanel.RequestThread
-
- AwtParameters - Class in jspecview.common
-
- AwtParameters(String) - Constructor for class jspecview.common.AwtParameters
-
- AwtPopupMenu - Class in jspecview.common
-
Popup Menu for JSVPanel.
- AwtPopupMenu(ScriptInterface) - Constructor for class jspecview.common.AwtPopupMenu
-
- AwtPopupMenu.EnumOverlay - Enum in jspecview.common
-
- AwtPrintLayoutDialog - Class in jspecview.common
-
Dialog to set print preferences for JSpecview.
- AwtPrintLayoutDialog(Frame, PrintLayout, boolean) - Constructor for class jspecview.common.AwtPrintLayoutDialog
-
Initialises a modal PrintLayoutDialog
with a default title
of "Print Layout".