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R

read(char[]) - Method in class jspecview.util.ZipFileSequentialReader
 
readLine() - Method in class jspecview.util.ZipFileSequentialReader
 
readLineTrimmed() - Method in class jspecview.source.JDXSourceStreamTokenizer
 
refresh() - Method in class jspecview.common.PanelData
 
refresh() - Method in class jspecview.common.RepaintManager
 
register(String, JmolSyncInterface) - Method in class jspecview.application.MainFrame
called by Jmol's StatusListener to register itself, indicating to JSpecView that it needs to synchronize with it
register(String, JmolSyncInterface) - Method in interface org.jmol.api.JmolSyncInterface
 
remove(int) - Method in class jspecview.common.IntegralData
 
removeAllHighlights() - Method in class jspecview.applet.JSVApplet
 
removeAllHighlights() - Method in class jspecview.applet.JSVAppletPrivate
Method that can be called from another applet or from javascript that removes all highlights from the plot area of a JSVPanel
removeAllHighlights() - Method in class jspecview.application.MainFrame
 
removeAllHighlights() - Method in interface jspecview.common.JSVAppletInterface
Method that can be called from another applet or from javascript that removes all highlights from the plot area of a JSVPanel
removeAllHighlights(ScriptInterface) - Static method in class jspecview.common.JSViewer
 
removeAllHighlights() - Method in class jspecview.common.PanelData
Removes all highlights from the display
removeDialog(AnnotationDialog) - Method in class jspecview.common.PanelData
 
removeHighlight(double, double) - Method in class jspecview.applet.JSVApplet
 
removeHighlight(double, double) - Method in class jspecview.applet.JSVAppletPrivate
Method that can be called from another applet or from javascript that removes a highlight from the plot area of a JSVPanel
removeHighlight(double, double) - Method in class jspecview.application.MainFrame
 
removeHighlight(double, double) - Method in interface jspecview.common.JSVAppletInterface
Method that can be called from another applet or from javascript that removes a highlight from the plot area of a JSVPanel
removeHighlight(int) - Method in class jspecview.common.PanelData
Remove the highlight at the specified index in the internal list of highlights The index depends on the order in which the highlights were added
removeHighlight(double, double) - Method in class jspecview.common.PanelData
Remove the highlight specified by the starting and ending x value
removeHighlights(ScriptInterface, double, double) - Static method in class jspecview.common.JSViewer
 
removeScale(Coordinate[], double, double) - Static method in class jspecview.common.Coordinate
Removes the scale factor from the coordinates
repaint() - Method in class jspecview.applet.JSVAppletPrivate
 
repaint() - Method in interface jspecview.common.ScriptInterface
 
repaintCompleted() - Method in class jspecview.applet.JSVAppletPrivate
 
repaintCompleted() - Method in class jspecview.application.MainFrame
 
repaintCompleted() - Method in interface jspecview.common.ScriptInterface
 
repaintDone() - Method in class jspecview.common.RepaintManager
 
RepaintManager - Class in jspecview.common
 
RepaintManager(ScriptInterface) - Constructor for class jspecview.common.RepaintManager
 
replaceAllCharacters(String, String, String) - Static method in class jspecview.util.TextFormat
Does a clean replace of any of the characters in str with strTo If strTo contains strFrom, then only a single pass is done.
replaceAllCharacters(String, String, char) - Static method in class jspecview.util.TextFormat
Does a clean replace of any of the characters in str with chrTo If strTo contains strFrom, then only a single pass is done.
requestRepaint() - Method in class jspecview.applet.JSVAppletPrivate
 
requestRepaint() - Method in class jspecview.application.MainFrame
 
requestRepaint() - Method in interface jspecview.common.ScriptInterface
 
requiresEndTag() - Method in class jspecview.util.SimpleXmlReader
 
reset() - Method in class jspecview.util.ZipFileSequentialReader
 
resetMenuItem - Variable in class jspecview.common.AwtPopupMenu
Allows for the JSVPanel to be reset to it's original display
resetView() - Method in class jspecview.common.PanelData
Resets the spectrum to it's original view
reverse(Coordinate[]) - Static method in class jspecview.common.Coordinate
 
reversePlot() - Method in class jspecview.applet.JSVApplet
 
reversePlot() - Method in class jspecview.applet.JSVAppletPrivate
Method that can be called from another applet or from javascript that toggles reversing the plot on a JSVPanel
reversePlot() - Method in class jspecview.application.MainFrame
 
reversePlot() - Method in interface jspecview.common.JSVAppletInterface
Method that can be called from another applet or from javascript that toggles reversing the plot on a JSVPanel
reversePlotCheckBoxMenuItem - Variable in class jspecview.common.AwtPopupMenu
 
rFill(StringBuffer, String, String) - Static method in class jspecview.util.TextFormat
 
rgb(int, int, int) - Static method in class jspecview.util.ColorUtil
 
rtrim(String, String) - Static method in class jspecview.util.TextFormat
 
run() - Method in class jspecview.common.AwtPanel.RequestThread
 
runScript(String) - Method in class jspecview.applet.JSVApplet
 
runScript(String) - Method in class jspecview.applet.JSVAppletPrivate
 
runScript(String) - Method in class jspecview.application.JSpecView
for the applet, this is queued
runScript(String) - Method in class jspecview.application.MainFrame
ScriptInterface requires this.
runScript(String) - Method in interface jspecview.common.JSVAppletInterface
runs a script in proper order as listed
runScript(String) - Method in interface jspecview.common.ScriptInterface
 
runScript(String) - Method in interface org.jmol.api.JSVInterface
 
runScriptNow(String) - Method in class jspecview.applet.JSVApplet
 
runScriptNow(String) - Method in class jspecview.applet.JSVAppletPrivate
 
runScriptNow(String) - Method in class jspecview.application.MainFrame
 
runScriptNow(String) - Method in interface jspecview.common.JSVAppletInterface
 
runScriptNow(ScriptInterface, String) - Static method in class jspecview.common.JSViewer
 
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