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C

c - Static variable in class jspecview.common.Integral
 
calculateIntegral() - Method in class jspecview.common.IntegralData
 
canConvertTransAbs() - Method in class jspecview.common.JDXDataObject
 
canIntegrate() - Method in class jspecview.common.JDXDataObject
 
canSaveAsJDX() - Method in class jspecview.common.JDXDataObject
 
canShowSolutionColor() - Method in class jspecview.common.JDXDataObject
 
CHARACTERS - Static variable in class jspecview.util.SimpleXmlReader
 
checkCallbacks(String) - Method in class jspecview.applet.JSVAppletPrivate
 
checkCallbacks(String) - Method in class jspecview.application.MainFrame
 
checkCallbacks(String) - Method in interface jspecview.common.ScriptInterface
 
checkFileIndex(String, String) - Method in class jspecview.common.PeakInfo
 
checkFileTypeModel(String, String, String) - Method in class jspecview.common.PeakInfo
type checks true for MS in GC/MS; reverse of checkType
checkForError() - Static method in class jspecview.util.Logger
 
checkIntegral(Parameters, String) - Method in class jspecview.common.PanelData
 
checkMemory() - Static method in class jspecview.util.Logger
 
checkOverlay() - Method in class jspecview.applet.JSVAppletPrivate
 
checkOverlay() - Method in class jspecview.application.MainFrame
 
checkOverlay() - Method in interface jspecview.common.ScriptInterface
 
checkParameters(MeasurementData, Parameters) - Static method in class jspecview.common.MeasurementData
 
checkRequiredTokens() - Method in class jspecview.common.JDXDataObject
 
checkTimer(String) - Static method in class jspecview.util.Logger
 
checkTypeMatch(PeakInfo) - Method in class jspecview.common.PeakInfo
 
checkTypeModel(String, String) - Method in class jspecview.common.PeakInfo
 
classifyName(String, URL) - Static method in class jspecview.util.FileManager
FileManager.classifyName follow this with .replace('\\','/') and Escape.escape() to match Jmol's file name in
cleanLabel(String) - Static method in class jspecview.source.JDXSourceStreamTokenizer
Extracts spaces, underscores etc.
clear() - Method in class jspecview.common.IntegralData
 
clearAllView() - Method in class jspecview.common.PanelData
Clears all views in the zoom list
clearIntegrals() - Method in class jspecview.common.PanelData
 
clearLinkViews(GraphSet) - Method in class jspecview.common.PanelData
 
clearMeasurements() - Method in class jspecview.common.PanelData
 
clearMenuItem - Variable in class jspecview.common.AwtPopupMenu
Allows for all view to be cleared
clearSourceMenu(JDXSource) - Method in class jspecview.application.AppMenu
 
close(ScriptInterface, String) - Static method in class jspecview.common.JSVTree
 
close() - Method in class jspecview.util.ZipFileSequentialReader
 
closeAllDialogsExcept(Annotation.AType) - Method in class jspecview.common.PanelData
 
closeSource(JDXSource) - Method in class jspecview.applet.JSVAppletPrivate
 
closeSource(JDXSource) - Method in class jspecview.application.MainFrame
Closes the JDXSource specified by source
closeSource(ScriptInterface, JDXSource) - Static method in class jspecview.common.JSVTree
 
closeSource(JDXSource) - Method in interface jspecview.common.ScriptInterface
 
colorToHexString(Object) - Static method in class jspecview.common.AwtParameters
Returns a hex string representation of a Color object
colorTriadToInt(float, float, float) - Static method in class jspecview.util.ColorUtil
 
ColorUtil - Class in jspecview.util
 
ColorUtil() - Constructor for class jspecview.util.ColorUtil
 
Colour(Coordinate[], String) - Static method in class jspecview.common.Visible
 
CommandHistory - Class in jspecview.application
CommandHistory keeps a command history and responds to key events
CommandHistory(ScriptInterface, JTextField) - Constructor for class jspecview.application.CommandHistory
 
COMMENT - Static variable in class jspecview.util.SimpleXmlReader
 
compare(Coordinate, Coordinate) - Method in class jspecview.common.CoordComparator
 
compare(Measurement, Measurement) - Method in class jspecview.common.IntegralComparator
 
concatTokens(String[], int, int) - Static method in class jspecview.util.Parser
 
CoordComparator - Class in jspecview.common
 
CoordComparator() - Constructor for class jspecview.common.CoordComparator
 
Coordinate - Class in jspecview.common
The Coordinate class stores the x and y values of a coordinate.
Coordinate() - Constructor for class jspecview.common.Coordinate
Constructor
Coordinate(double, double) - Constructor for class jspecview.common.Coordinate
Constructor
coordsCheckBoxMenuItem - Variable in class jspecview.common.AwtPopupMenu
 
copy() - Method in class jspecview.common.Coordinate
Returns a new coordinate that has the same x and y values of this coordinate
copy() - Method in class jspecview.common.JDXSpectrum
specifically for Abs/Trans conversion.
copy(String) - Method in class jspecview.common.Parameters
Returns a copy of this DisplayScheme with a new name
copy() - Method in class jspecview.common.Parameters
Returns a copy of this DisplayScheme
copyTo(JDXDataObject) - Method in class jspecview.common.JDXDataObject
 
createJDXSource(InputStream, boolean, boolean) - Static method in class jspecview.source.FileReader
used only for preferences display and Android
createJDXSource(BufferedReader, String, URL, boolean, boolean, int, int) - Static method in class jspecview.source.FileReader
general entrance method
createPdfDocument(AwtPanel, PrintLayout, OutputStream) - Method in class jspecview.common.PdfCreator
 
createSource(String, String, URL, int, int) - Method in class jspecview.applet.JSVAppletPrivate
 
createSource(String, String, URL, int, int) - Method in class jspecview.application.MainFrame
 
createSource(String, String, URL, int, int) - Method in interface jspecview.common.ScriptInterface
 
createTree(ScriptInterface, JDXSource, JSVPanel[]) - Static method in class jspecview.common.JSVTree
 
createView(List<JDXSpectrum>) - Static method in class jspecview.source.JDXSource
 
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