Package | Description |
---|---|
jspecview.applet | |
jspecview.application | |
jspecview.common | |
jspecview.export | |
jspecview.source |
Modifier and Type | Method and Description |
---|---|
JSVPanel |
JSVAppletPrivate.getNewJSVPanel(JDXSpectrum spec) |
Modifier and Type | Method and Description |
---|---|
JSVPanel |
JSVAppletPrivate.getNewJSVPanel(java.util.List<JDXSpectrum> specs) |
void |
JSVAppletPrivate.openDataOrFile(java.lang.String data,
java.lang.String name,
java.util.List<JDXSpectrum> specs,
java.lang.String url,
int firstSpec,
int lastSpec,
boolean isAppend) |
void |
JSVAppletPrivate.process(java.util.List<JDXSpectrum> specs) |
Modifier and Type | Method and Description |
---|---|
JSVPanel |
MainFrame.getNewJSVPanel(JDXSpectrum spec) |
static void |
TextDialog.showProperties(java.awt.Component c,
JDXSpectrum spectrum) |
Modifier and Type | Method and Description |
---|---|
JSVPanel |
MainFrame.getNewJSVPanel(java.util.List<JDXSpectrum> specs) |
void |
MainFrame.openDataOrFile(java.lang.String data,
java.lang.String name,
java.util.List<JDXSpectrum> specs,
java.lang.String url,
int firstSpec,
int lastSpec,
boolean isAppend) |
Modifier and Type | Field and Description |
---|---|
JDXSpectrum |
Annotation.spec |
JDXSpectrum |
PeakInfo.spectrum |
Modifier and Type | Method and Description |
---|---|
JDXSpectrum |
JDXSpectrum.copy()
specifically for Abs/Trans conversion.
|
JDXSpectrum |
JDXSpectrum.getConvertedSpectrum() |
JDXSpectrum |
JDXSpectrum.getCurrentSubSpectrum() |
JDXSpectrum |
PanelData.getSpectrum() |
JDXSpectrum |
MeasurementData.getSpectrum() |
JDXSpectrum |
Measurement.getSpectrum() |
JDXSpectrum |
JSVPanelNode.getSpectrum() |
JDXSpectrum |
AnnotationData.getSpectrum() |
JDXSpectrum |
PanelData.getSpectrumAt(int index) |
static JDXSpectrum |
JDXSpectrum.newSpectrum(JDXSpectrum spectrum,
Coordinate[] newXYCoords,
java.lang.String units)
copy spectrum with new coordinates
|
static JDXSpectrum |
JDXSpectrum.taConvert(JDXSpectrum spectrum,
JDXSpectrum.IRMode mode) |
Modifier and Type | Method and Description |
---|---|
java.util.List<JDXSpectrum> |
JDXSpectrum.getSubSpectra() |
Modifier and Type | Method and Description |
---|---|
void |
PanelData.addHighlight(jspecview.common.GraphSet gs,
double x1,
double x2,
JDXSpectrum spec,
int r,
int g,
int b,
int a)
Add information about a region of the displayed spectrum to be highlighted
applet only right now
|
boolean |
JDXSpectrum.addSubSpectrum(JDXSpectrum spectrum,
boolean forceSub)
adds an nD subspectrum and titles it "Subspectrum
|
static boolean |
JDXSpectrum.allowSubSpec(JDXSpectrum s1,
JDXSpectrum s2) |
static boolean |
JDXSpectrum.areLinkableX(JDXSpectrum s1,
JDXSpectrum s2) |
static boolean |
JDXSpectrum.areLinkableY(JDXSpectrum s1,
JDXSpectrum s2) |
static boolean |
JDXSpectrum.areXScalesCompatible(JDXSpectrum s1,
JDXSpectrum s2,
boolean isSubspecCheck,
boolean isLinkCheck) |
void |
PanelData.findX(JDXSpectrum spec,
double d) |
void |
PanelData.findX2(JDXSpectrum spec,
double d,
JDXSpectrum spec2,
double d2) |
static AwtColoredAnnotation |
AwtColoredAnnotation.getAnnotation(JDXSpectrum spec,
java.util.List<java.lang.String> args,
AwtColoredAnnotation lastAnnotation) |
static java.util.ArrayList<Annotation> |
IntegralData.getIntegrationRatiosFromString(JDXSpectrum spec,
java.lang.String value)
Parses integration ratios and x values from a string and returns them as
IntegrationRatio objects |
JSVPanel |
ScriptInterface.getNewJSVPanel(JDXSpectrum spec) |
JSVPanel |
AwtPanel.getNewPanel(ScriptInterface si,
JDXSpectrum spectrum) |
JSVPanel |
JSVPanel.getNewPanel(ScriptInterface si,
JDXSpectrum spectrum) |
static AwtPanel |
AwtPanel.getNewPanel(ScriptInterface si,
JDXSpectrum spec,
AwtPopupMenu jsvpPopupMenu)
generates a single panel or an integrated panel, as appropriate
|
static JDXSpectrum |
JDXSpectrum.newSpectrum(JDXSpectrum spectrum,
Coordinate[] newXYCoords,
java.lang.String units)
copy spectrum with new coordinates
|
void |
JDXSpectrum.setConvertedSpectrum(JDXSpectrum spectrum) |
void |
PanelData.setSpectrum(JDXSpectrum spec) |
static JDXSpectrum |
JDXSpectrum.taConvert(JDXSpectrum spectrum,
JDXSpectrum.IRMode mode) |
Modifier and Type | Method and Description |
---|---|
void |
PanelData.addToList(int iSpec,
java.util.List<JDXSpectrum> list) |
static AwtPanel |
AwtPanel.getJSVPanel(ScriptInterface si,
java.util.List<JDXSpectrum> specs,
int startIndex,
int endIndex,
AwtPopupMenu popup) |
static double |
Coordinate.getMaxX(java.util.List<JDXSpectrum> spectra,
jspecview.common.ViewData vd)
Returns the maximum x value value from an array of arrays of
Coordinate s. |
static double |
Coordinate.getMaxYUser(java.util.List<JDXSpectrum> spectra,
jspecview.common.ViewData vd)
Returns the maximum y value value from an array of arrays of
Coordinate s. |
static double |
Coordinate.getMinX(java.util.List<JDXSpectrum> spectra,
jspecview.common.ViewData vd)
Returns the minimum x value value from an array of arrays of
Coordinate s. |
static double |
Coordinate.getMinYUser(java.util.List<JDXSpectrum> spectra,
jspecview.common.ViewData vd)
Returns the minimum y value value from an array of arrays of
Coordinate s. |
JSVPanel |
ScriptInterface.getNewJSVPanel(java.util.List<JDXSpectrum> specs) |
static int |
JSVTree.openDataOrFile(ScriptInterface si,
java.lang.String data,
java.lang.String name,
java.util.List<JDXSpectrum> specs,
java.lang.String url,
int firstSpec,
int lastSpec,
boolean isAppend) |
void |
ScriptInterface.openDataOrFile(java.lang.String data,
java.lang.String name,
java.util.List<JDXSpectrum> specs,
java.lang.String url,
int firstSpec,
int lastSpec,
boolean doCheck) |
static boolean |
JDXSpectrum.process(java.util.List<JDXSpectrum> specs,
JDXSpectrum.IRMode irMode) |
Constructor and Description |
---|
Annotation(JDXSpectrum spec,
double x,
double y) |
Annotation(JDXSpectrum spec,
double x,
double y,
java.lang.String text,
boolean isPixels,
boolean is2D,
int offsetX,
int offsetY)
Constructor -- note that x is spectral X value, but y is pixels above
baseline
|
AwtColoredAnnotation(JDXSpectrum spec,
double x,
double y,
java.lang.String text,
java.awt.Color color,
boolean isPixels,
boolean is2D,
int offsetX,
int offsetY) |
AwtPanel(ScriptInterface si,
JDXSpectrum spectrum,
AwtPopupMenu popup)
Constructs a new JSVPanel
|
IntegralData(double integralMinY,
double integralOffset,
double integralRange,
JDXSpectrum spec) |
IntegralData(JDXSpectrum spec,
Parameters p) |
Measurement(JDXSpectrum spec,
double x,
double y) |
Measurement(JDXSpectrum spec,
double x,
double y,
boolean doSetPt2) |
Measurement(JDXSpectrum spec,
double x,
double y,
java.lang.String text,
double value) |
Measurement(JDXSpectrum spec,
double x,
double y,
java.lang.String text,
double x1,
double y1) |
MeasurementData(Annotation.AType type,
JDXSpectrum spec) |
PeakData(Annotation.AType type,
JDXSpectrum spec) |
PeakPick(JDXSpectrum spec,
double x,
double y) |
PeakPick(JDXSpectrum spec,
double x,
double y,
java.lang.String text,
double value) |
Modifier and Type | Method and Description |
---|---|
static java.lang.String |
Exporter.exportTheSpectrum(Exporter.ExportType mode,
java.lang.String path,
JDXSpectrum spec,
int startIndex,
int endIndex)
returns message if path is not null, otherwise full string of text (unsigned applet)
|
Modifier and Type | Method and Description |
---|---|
JDXSpectrum |
JDXSource.getJDXSpectrum(int index)
Returns the Spectrum at a given index in the list
|
Modifier and Type | Method and Description |
---|---|
java.util.List<JDXSpectrum> |
JDXSource.getSpectra()
Returns the Vector of Spectra
|
Modifier and Type | Method and Description |
---|---|
void |
JDXSource.addJDXSpectrum(java.lang.String filePath,
JDXSpectrum spectrum,
boolean forceSub)
Adds a Spectrum to the list
|
Modifier and Type | Method and Description |
---|---|
static JDXSource |
JDXSource.createView(java.util.List<JDXSpectrum> specs) |