JSVAppletInterface appletPrivate
boolean isStandalone
MainFrame mainFrame
JSVAppletInterface appletPrivate0
MainFrame mainFrame
AwtPopupMenu jsvpPopupMenu
javax.swing.JMenu fileMenu
javax.swing.JMenuItem openMenuItem
javax.swing.JMenuItem openURLMenuItem
javax.swing.JMenuItem printMenuItem
javax.swing.JMenuItem closeMenuItem
javax.swing.JMenuItem closeAllMenuItem
javax.swing.JMenu saveAsMenu
javax.swing.JMenu saveAsJDXMenu
javax.swing.JMenu exportAsMenu
javax.swing.JMenuItem exitMenuItem
javax.swing.JMenu helpMenu
javax.swing.JMenu optionsMenu
javax.swing.JMenu displayMenu
javax.swing.JMenu zoomMenu
javax.swing.JCheckBoxMenuItem gridCheckBoxMenuItem
javax.swing.JCheckBoxMenuItem coordsCheckBoxMenuItem
javax.swing.JCheckBoxMenuItem revPlotCheckBoxMenuItem
javax.swing.JCheckBoxMenuItem scaleXCheckBoxMenuItem
javax.swing.JCheckBoxMenuItem scaleYCheckBoxMenuItem
javax.swing.JMenuItem nextZoomMenuItem
javax.swing.JMenuItem prevZoomMenuItem
javax.swing.JMenuItem fullZoomMenuItem
javax.swing.JMenuItem clearZoomMenuItem
javax.swing.JMenuItem userZoomMenuItem
javax.swing.JMenuItem preferencesMenuItem
javax.swing.JMenuItem contentsMenuItem
javax.swing.JMenuItem aboutMenuItem
javax.swing.JMenu openRecentMenu
javax.swing.JCheckBoxMenuItem toolbarCheckBoxMenuItem
javax.swing.JCheckBoxMenuItem sidePanelCheckBoxMenuItem
javax.swing.JCheckBoxMenuItem statusCheckBoxMenuItem
javax.swing.JMenuItem overlayStackOffsetYMenuItem
javax.swing.JMenuItem spectraMenuItem
javax.swing.JMenuItem sourceMenuItem
javax.swing.JMenuItem propertiesMenuItem
javax.swing.JMenuItem scriptMenuItem
javax.swing.JMenu processingMenu
javax.swing.JMenuItem errorLogMenuItem
javax.swing.JMenuItem overlayKeyMenuItem
MainFrame mainFrame
javax.swing.JButton previousButton
javax.swing.JButton nextButton
javax.swing.JButton resetButton
javax.swing.JButton clearButton
javax.swing.JButton openButton
javax.swing.JButton propertiesButton
javax.swing.JButton errorLogButton
javax.swing.JToggleButton gridToggleButton
javax.swing.JToggleButton coordsToggleButton
javax.swing.JButton printButton
javax.swing.JToggleButton revPlotToggleButton
javax.swing.JButton aboutButton
javax.swing.JButton spectraButton
javax.swing.JButton overlayKeyButton
javax.swing.ImageIcon openIcon
javax.swing.ImageIcon printIcon
javax.swing.ImageIcon gridIcon
javax.swing.ImageIcon coordinatesIcon
javax.swing.ImageIcon reverseIcon
javax.swing.ImageIcon previousIcon
javax.swing.ImageIcon nextIcon
javax.swing.ImageIcon resetIcon
javax.swing.ImageIcon clearIcon
javax.swing.ImageIcon informationIcon
javax.swing.ImageIcon aboutIcon
javax.swing.ImageIcon spectrumIcon
javax.swing.ImageIcon overlayKeyIcon
javax.swing.ImageIcon errorLogIcon
javax.swing.ImageIcon errorLogYellowIcon
javax.swing.ImageIcon errorLogRedIcon
AppMenu appMenu
AppToolBar toolBar
javax.swing.JTextField commandInput
java.awt.BorderLayout mainborderLayout
javax.swing.JSplitPane mainSplitPane
javax.swing.JPanel nullPanel
javax.swing.JSplitPane sideSplitPane
JSVAppletPrivatePro advancedApplet
CommandHistory commandHistory
JDXSource currentSource
DialogHelper dialogHelper
DisplaySchemesProcessor dsp
java.awt.dnd.DropTargetListener dtl
JmolSyncInterface jmol
java.awt.Component jmolDisplay
java.awt.Dimension jmolDimensionOld
java.awt.Container jmolFrame
java.awt.Dimension jmolDimensionNew
JSVInterface jmolOrAdvancedApplet
AwtPopupMenu jsvpPopupMenu
java.util.List<E> panelNodes
AwtParameters parameters
JSVPanel prevPanel
java.util.Properties properties
java.util.List<E> recentFilePaths
RepaintManager repaintManager
JSVPanel selectedPanel
JSVTree spectraTree
javax.swing.JScrollPane spectraTreeScrollPane
ViewPanel spectrumPanel
javax.swing.JPanel statusPanel
javax.swing.JLabel statusLabel
JDXSpectrum.IRMode irMode
boolean autoIntegrate
boolean autoShowLegend
boolean isEmbedded
boolean isHidden
boolean interfaceOverlaid
boolean loadImaginary
boolean sidePanelOn
boolean showExitDialog
boolean statusbarOn
boolean svgForInkscape
boolean toolbarOn
int mainSplitPosition
int fileCount
int nViews
int scriptLevelCount
int splitPosition
java.lang.String tempDS
java.lang.String returnFromJmolModel
java.lang.String recentOpenURL
java.lang.String defaultDisplaySchemeName
java.lang.String recentURL
java.lang.String integrationRatios
javax.swing.JPanel contentpanel
java.awt.BorderLayout contentBorderLayout
javax.swing.JTabbedPane preferencesTabbedPane
javax.swing.JPanel generalPanel
javax.swing.JPanel displayPanel
javax.swing.border.TitledBorder fontTitledBorder
javax.swing.border.TitledBorder contentTitledBorder
javax.swing.JCheckBox confirmExitCheckBox
javax.swing.JCheckBox statusBarCheckBox
javax.swing.JCheckBox toolbarCheckBox
javax.swing.JCheckBox sidePanelCheckBox
javax.swing.JCheckBox exportDirCheckBox
javax.swing.JCheckBox openedDirCheckBox
javax.swing.JCheckBox legendCheckBox
javax.swing.JCheckBox overlayCheckBox
javax.swing.JButton clearRecentButton
javax.swing.JButton cancelButton
javax.swing.JPanel buttonPanel
javax.swing.JButton okButton
java.awt.BorderLayout borderLayout6
javax.swing.DefaultListModel<E> elModel
javax.swing.JPanel topPanel
javax.swing.JPanel displayFontPanel
javax.swing.JPanel colorSchemePanel
javax.swing.JPanel elementPanel
javax.swing.JLabel elementLabel
java.awt.GridBagLayout gridBagLayout1
javax.swing.JCheckBox defaultFontCheckBox
javax.swing.JComboBox<E> fontComboBox
java.awt.GridBagLayout gridBagLayout2
javax.swing.JPanel colorPanel
javax.swing.JComboBox<E> schemeComboBox
java.awt.GridLayout gridLayout1
javax.swing.JCheckBox defaultColorCheckBox
javax.swing.JButton customButton
java.awt.GridBagLayout gridBagLayout3
javax.swing.JScrollPane listScrollPane
javax.swing.JList<E> elementList
javax.swing.JButton colorButton8
javax.swing.JButton colorButton7
javax.swing.JButton colorButton6
javax.swing.JButton colorButton5
javax.swing.JButton colorButton4
javax.swing.JButton colorButton3
javax.swing.JButton colorButton2
javax.swing.JButton colorButton1
javax.swing.JButton currentColorButton
javax.swing.JPanel processingPanel
java.awt.GridBagLayout gridBagLayout4
javax.swing.JButton saveButton
java.awt.GridBagLayout gridBagLayout5
javax.swing.JPanel integrationPanel
javax.swing.JPanel absTransPanel
java.awt.GridBagLayout gridBagLayout6
javax.swing.border.TitledBorder integratinTitledBorder
javax.swing.JLabel jLabel1
javax.swing.JTextField minYTextField
javax.swing.JLabel jLabel2
javax.swing.JTextField integFactorTextField
javax.swing.JLabel jLabel3
javax.swing.JLabel jLabel4
javax.swing.JButton processingCustomButton
javax.swing.JCheckBox autoIntegrateCheckBox
javax.swing.JTextField integOffsetTextField
javax.swing.border.TitledBorder absTransTitledBorder
javax.swing.JCheckBox separateWindowCheckBox
javax.swing.JLabel jLabel5
javax.swing.JLabel jLabel6
javax.swing.JLabel jLabel7
java.awt.GridBagLayout gridBagLayout7
javax.swing.JRadioButton TtoARadioButton
javax.swing.JRadioButton AtoTRadioButton
javax.swing.ButtonGroup conversionButtonGroup
Parameters currentDS
DisplaySchemesProcessor dsp
AwtPanel previewPanel
java.lang.String defaultDSName
javax.swing.JLabel jLabel8
javax.swing.JLabel jLabel9
javax.swing.JCheckBox AutoConvertCheckBox
javax.swing.JButton plotColorButton
javax.swing.JPanel colorPanel1
javax.swing.JButton procColorButton8
javax.swing.JButton procColorButton7
javax.swing.JButton procColorButton6
javax.swing.JButton procColorButton5
javax.swing.JButton procColorButton4
javax.swing.JButton procColorButton3
javax.swing.JButton procColorButton2
java.awt.GridLayout gridLayout2
javax.swing.JButton procColorButton1
javax.swing.JCheckBox gridCheckBox
javax.swing.JCheckBox coordinatesCheckBox
javax.swing.JCheckBox scaleXCheckBox
javax.swing.JCheckBox svgForInkscapeCheckBox
javax.swing.JPanel applicationPanel
javax.swing.JPanel uiPanel
javax.swing.JPanel spectrumPanel
javax.swing.JCheckBox spectrumDisplayApplyNowCheckBox
java.util.Properties preferences
boolean isSpectrumDisplayApplyNowEnabled
javax.swing.JCheckBox scaleYCheckBox
javax.swing.JPanel panel
javax.swing.JButton deleteButton
JSVPanel jsvp
AwtPopupMenu popup
ScriptInterface si
PanelData pd
java.awt.Color coordinatesColor
java.awt.Color gridColor
java.awt.Color integralPlotColor
java.awt.Color peakTabColor
java.awt.Color plotAreaColor
java.awt.Color scaleColor
java.awt.Color titleColor
java.awt.Color unitsColor
java.awt.Color highlightColor
java.awt.Color zoomBoxColor
java.awt.Color zoomBoxColor2
boolean isApplet
ScriptInterface scripter
javax.swing.JMenuItem nextMenuItem
javax.swing.JMenuItem previousMenuItem
javax.swing.JMenuItem clearMenuItem
javax.swing.JMenuItem resetMenuItem
javax.swing.JMenuItem properties
JSVPanel
javax.swing.JMenuItem userZoomMenuItem
javax.swing.JMenuItem scriptMenuItem
javax.swing.JMenuItem overlayStackOffsetMenuItem
javax.swing.JMenuItem integrationMenuItem
javax.swing.JMenuItem measurementsMenuItem
javax.swing.JMenuItem peakListMenuItem
javax.swing.JMenuItem transAbsMenuItem
javax.swing.JMenuItem solColMenuItem
javax.swing.JCheckBoxMenuItem gridCheckBoxMenuItem
javax.swing.JCheckBoxMenuItem coordsCheckBoxMenuItem
javax.swing.JCheckBoxMenuItem reversePlotCheckBoxMenuItem
javax.swing.JMenu appletSaveAsJDXMenu
javax.swing.JMenu appletExportAsMenu
javax.swing.JMenuItem spectraMenuItem
javax.swing.JMenuItem overlayKeyMenuItem
java.lang.String recentZoom
java.lang.String recentScript
java.lang.String recentStackPercent
PanelData pd
int thisX
int thisY
JSVPanel thisJsvp
javax.swing.border.TitledBorder titledBorder1
javax.swing.border.TitledBorder titledBorder2
javax.swing.border.TitledBorder titledBorder3
javax.swing.border.TitledBorder titledBorder4
javax.swing.border.TitledBorder titledBorder5
javax.swing.border.TitledBorder titledBorder6
javax.swing.border.TitledBorder titledBorder7
javax.swing.border.TitledBorder titledBorder8
javax.swing.border.TitledBorder titledBorder9
javax.swing.ButtonGroup layoutButtonGroup
javax.swing.ButtonGroup fontButtonGroup
javax.swing.ButtonGroup positionButtonGroup
PrintLayout pl
PrintLayout plNew
javax.swing.JPanel jPanel1
javax.swing.JPanel layoutPanel
javax.swing.JPanel positionPanel
javax.swing.JPanel layoutContentPanel
javax.swing.JPanel previewPanel
javax.swing.JPanel fontPanel
javax.swing.JPanel elementsPanel
javax.swing.JPanel jPanel2
javax.swing.JButton layoutButton
javax.swing.JButton previewButton
javax.swing.JButton cancelButton
javax.swing.JButton printButton
javax.swing.JButton pdfButton
java.awt.GridBagLayout gridBagLayout7
java.awt.GridBagLayout gridBagLayout6
java.awt.GridBagLayout gridBagLayout5
java.awt.GridBagLayout gridBagLayout4
java.awt.GridBagLayout gridBagLayout3
java.awt.GridBagLayout gridBagLayout2
java.awt.GridBagLayout gridBagLayout1
javax.swing.JCheckBox scaleXCheckBox
javax.swing.JCheckBox scaleYCheckBox
javax.swing.JCheckBox gridCheckBox
javax.swing.JCheckBox titleCheckBox
javax.swing.JRadioButton landscapeRadioButton
javax.swing.JRadioButton defaultPosRadioButton
javax.swing.JRadioButton centerRadioButton
javax.swing.JRadioButton portraitRadioButton
javax.swing.JRadioButton fitToPageRadioButton
javax.swing.JRadioButton chooseFontRadioButton
javax.swing.JRadioButton defaultFontRadioButton
double percentMinY
double percentOffset
double intRange
double normalizationFactor
double percentRange
double offset
double integralTotal
boolean haveRegions
Coordinate[] xyCoords
ScriptInterface si
JSVTreeNode rootNode
javax.swing.tree.DefaultTreeModel spectraTreeModel
JSVPanelNode panelNode
int index
Annotation.AType type
JDXSpectrum spec
boolean isON
Parameters myParams
java.text.DecimalFormat df
java.lang.String units
java.lang.String key
Coordinate coord
PeakInfo peakInfo
ScriptInterface si
java.util.List<E> treeNodes
java.util.List<E> checkBoxes
javax.swing.JPanel spectrumPanel
java.awt.Insets cbInsets1
java.awt.Insets cbInsets2
javax.swing.JButton closeSelectedButton
javax.swing.JButton combineSelectedButton
javax.swing.JButton viewSelectedButton
boolean checking
JSVPanel selectedPanel
int currentPanelIndex