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A

AboutDialog - Class in jspecview.application
The About Dialog class is the help | about window for the JSpecView.
accept(File) - Method in class jspecview.common.JSVFileFilter
Implementation of method from interface FileFilter.
addAnnotation(List<String>) - Method in class jspecview.common.PanelData
 
addDialog(int, Annotation.AType, AnnotationData) - Method in class jspecview.common.PanelData
 
addExtension(String) - Method in class jspecview.common.JSVFileFilter
Adds an extension to the JSpecViewFileFilter
addHeader(List<String[]>, String, String) - Static method in class jspecview.source.FileReader
 
addHighlight(double, double, int, int, int, int) - Method in class jspecview.applet.JSVApplet
 
addHighlight(double, double, int, int, int, int) - Method in class jspecview.applet.JSVAppletPrivate
Method that can be called from another applet or from javascript that adds a highlight to a portion of the plot area of a JSVPanel
addHighlight(double, double, int, int, int, int) - Method in class jspecview.application.MainFrame
 
addHighlight(double, double, int, int, int, int) - Method in interface jspecview.common.JSVAppletInterface
Method that can be called from another applet or from javascript that adds a highlight to a portion of the plot area of a JSVPanel
addHighLight(ScriptInterface, double, double, int, int, int, int) - Static method in class jspecview.common.JSViewer
 
addHighlight(GraphSet, double, double, JDXSpectrum, int, int, int, int) - Method in class jspecview.common.PanelData
Add information about a region of the displayed spectrum to be highlighted applet only right now
addIntegralRegion(double, double) - Method in class jspecview.common.IntegralData
 
addJDXSpectrum(String, JDXSpectrum, boolean) - Method in class jspecview.source.JDXSource
Adds a Spectrum to the list
addListener(PanelListener) - Method in class jspecview.common.PanelData
 
addMarks(String) - Method in class jspecview.common.IntegralData
INTEGRATION MARK list where list is a comma-separated list of ppm1-ppm2 with :x.x added to normalize one of them and starting with 0-0 clears the integration
addPeakHighlight(PeakInfo) - Method in class jspecview.common.PanelData
 
addSpecShift(double) - Method in class jspecview.common.Annotation
 
addSpecShift(double) - Method in interface jspecview.common.AnnotationData
 
addSpecShift(double) - Method in class jspecview.common.IntegralData
 
addSpecShift(double) - Method in class jspecview.common.Measurement
 
addSpecShift(double) - Method in class jspecview.common.MeasurementData
 
addSubSpectrum(JDXSpectrum, boolean) - Method in class jspecview.common.JDXSpectrum
adds an nD subspectrum and titles it "Subspectrum " These spectra can be iterated over using the UP and DOWN keys.
addToList(int, List<JDXSpectrum>) - Method in class jspecview.common.PanelData
 
advanceSubSpectrum(int) - Method in class jspecview.common.JDXSpectrum
 
advanceSubSpectrum(int) - Method in class jspecview.common.PanelData
 
allowSubSpec(JDXSpectrum, JDXSpectrum) - Static method in class jspecview.common.JDXSpectrum
 
Annotation - Class in jspecview.common
The Annotation class stores the spectral x and pixel y values of an annotation text along with its text
Annotation(JDXSpectrum, double, double, String, boolean, boolean, int, int) - Constructor for class jspecview.common.Annotation
Constructor -- note that x is spectral X value, but y is pixels above baseline
Annotation(JDXSpectrum, double, double) - Constructor for class jspecview.common.Annotation
 
Annotation.AType - Enum in jspecview.common
 
AnnotationData - Interface in jspecview.common
 
AnnotationDialog - Interface in jspecview.common
 
applyScale(Coordinate[], double, double) - Static method in class jspecview.common.Coordinate
Apply the scale factor to the coordinates
applyShiftReference(Coordinate[], int, double, double, double, double, int) - Static method in class jspecview.common.Coordinate
Applies the shift reference to all coordinates
AppMenu - Class in jspecview.application
The Main Class or Entry point of the JSpecView Application.
AppMenu(MainFrame, AwtPopupMenu) - Constructor for class jspecview.application.AppMenu
 
AppToolBar - Class in jspecview.application
 
AppToolBar(MainFrame) - Constructor for class jspecview.application.AppToolBar
 
areLinkableX(JDXSpectrum, JDXSpectrum) - Static method in class jspecview.common.JDXSpectrum
 
areLinkableY(JDXSpectrum, JDXSpectrum) - Static method in class jspecview.common.JDXSpectrum
 
areXScalesCompatible(JDXSpectrum, JDXSpectrum, boolean, boolean) - Static method in class jspecview.common.JDXSpectrum
 
arrayCopy(int[], int, int, boolean) - Static method in class jspecview.util.ArrayUtil
 
ArrayUtil - Class in jspecview.util
 
ArrayUtil() - Constructor for class jspecview.util.ArrayUtil
 
asPDF - Variable in class jspecview.common.PrintLayout
 
autoIntegrate() - Method in class jspecview.common.IntegralData
 
autoSelectOnLoad() - Method in class jspecview.common.PeakInfo
a spectrum which, when loaded, should fire a message to load first peak -- GC for now
awaken(boolean) - Method in class jspecview.application.MainFrame
 
AwtColoredAnnotation - Class in jspecview.common
ColoredAnnotation is a label on the spectrum; not an integralRegion
AwtColoredAnnotation(JDXSpectrum, double, double, String, Color, boolean, boolean, int, int) - Constructor for class jspecview.common.AwtColoredAnnotation
 
AwtDialog - Class in jspecview.common
 
AwtDialog() - Constructor for class jspecview.common.AwtDialog
 
AwtOverlayLegendDialog - Class in jspecview.common
Dialog for showing the legend or key for overlaid plots in a JSVPanel.
AwtOverlayLegendDialog(Frame, JSVPanel) - Constructor for class jspecview.common.AwtOverlayLegendDialog
Initialises a non-modal OverlayLegendDialog with a default title of "Legend: " + jsvp.getTitle() and parent frame
AwtPanel - Class in jspecview.common
JSVPanel class represents a View combining one or more GraphSets, each with one or more JDXSpectra.
AwtPanel(ScriptInterface, JDXSpectrum, AwtPopupMenu) - Constructor for class jspecview.common.AwtPanel
Constructs a new JSVPanel
AwtPanel.RequestThread - Class in jspecview.common
 
AwtPanel.RequestThread() - Constructor for class jspecview.common.AwtPanel.RequestThread
 
AwtParameters - Class in jspecview.common
 
AwtParameters(String) - Constructor for class jspecview.common.AwtParameters
 
AwtPopupMenu - Class in jspecview.common
Popup Menu for JSVPanel.
AwtPopupMenu(ScriptInterface) - Constructor for class jspecview.common.AwtPopupMenu
 
AwtPopupMenu.EnumOverlay - Enum in jspecview.common
 
AwtPrintLayoutDialog - Class in jspecview.common
Dialog to set print preferences for JSpecview.
AwtPrintLayoutDialog(Frame, PrintLayout, boolean) - Constructor for class jspecview.common.AwtPrintLayoutDialog
Initialises a modal PrintLayoutDialog with a default title of "Print Layout".
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