- read(char[]) - Method in class jspecview.util.ZipFileSequentialReader
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- readLine() - Method in class jspecview.util.ZipFileSequentialReader
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- readLineTrimmed() - Method in class jspecview.source.JDXSourceStreamTokenizer
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- refresh() - Method in class jspecview.common.PanelData
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- refresh() - Method in class jspecview.common.RepaintManager
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- register(String, JmolSyncInterface) - Method in class jspecview.application.MainFrame
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called by Jmol's StatusListener to register itself, indicating to JSpecView
that it needs to synchronize with it
- register(String, JmolSyncInterface) - Method in interface org.jmol.api.JmolSyncInterface
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- remove(int) - Method in class jspecview.common.IntegralData
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- removeAllHighlights() - Method in class jspecview.applet.JSVApplet
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- removeAllHighlights() - Method in class jspecview.applet.JSVAppletPrivate
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Method that can be called from another applet or from javascript that
removes all highlights from the plot area of a JSVPanel
- removeAllHighlights() - Method in class jspecview.application.MainFrame
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- removeAllHighlights() - Method in interface jspecview.common.JSVAppletInterface
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Method that can be called from another applet or from javascript that
removes all highlights from the plot area of a JSVPanel
- removeAllHighlights(ScriptInterface) - Static method in class jspecview.common.JSViewer
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- removeAllHighlights() - Method in class jspecview.common.PanelData
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Removes all highlights from the display
- removeDialog(AnnotationDialog) - Method in class jspecview.common.PanelData
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- removeHighlight(double, double) - Method in class jspecview.applet.JSVApplet
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- removeHighlight(double, double) - Method in class jspecview.applet.JSVAppletPrivate
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Method that can be called from another applet or from javascript that
removes a highlight from the plot area of a JSVPanel
- removeHighlight(double, double) - Method in class jspecview.application.MainFrame
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- removeHighlight(double, double) - Method in interface jspecview.common.JSVAppletInterface
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Method that can be called from another applet or from javascript that
removes a highlight from the plot area of a JSVPanel
- removeHighlight(int) - Method in class jspecview.common.PanelData
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Remove the highlight at the specified index in the internal list of
highlights The index depends on the order in which the highlights were
added
- removeHighlight(double, double) - Method in class jspecview.common.PanelData
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Remove the highlight specified by the starting and ending x value
- removeHighlights(ScriptInterface, double, double) - Static method in class jspecview.common.JSViewer
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- removeScale(Coordinate[], double, double) - Static method in class jspecview.common.Coordinate
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Removes the scale factor from the coordinates
- repaint() - Method in class jspecview.applet.JSVAppletPrivate
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- repaint() - Method in interface jspecview.common.ScriptInterface
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- repaintCompleted() - Method in class jspecview.applet.JSVAppletPrivate
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- repaintCompleted() - Method in class jspecview.application.MainFrame
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- repaintCompleted() - Method in interface jspecview.common.ScriptInterface
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- repaintDone() - Method in class jspecview.common.RepaintManager
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- RepaintManager - Class in jspecview.common
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- RepaintManager(ScriptInterface) - Constructor for class jspecview.common.RepaintManager
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- replaceAllCharacters(String, String, String) - Static method in class jspecview.util.TextFormat
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Does a clean replace of any of the characters in str with strTo
If strTo contains strFrom, then only a single pass is done.
- replaceAllCharacters(String, String, char) - Static method in class jspecview.util.TextFormat
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Does a clean replace of any of the characters in str with chrTo
If strTo contains strFrom, then only a single pass is done.
- requestRepaint() - Method in class jspecview.applet.JSVAppletPrivate
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- requestRepaint() - Method in class jspecview.application.MainFrame
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- requestRepaint() - Method in interface jspecview.common.ScriptInterface
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- requiresEndTag() - Method in class jspecview.util.SimpleXmlReader
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- reset() - Method in class jspecview.util.ZipFileSequentialReader
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- resetMenuItem - Variable in class jspecview.common.AwtPopupMenu
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Allows for the JSVPanel to be reset to it's original display
- resetView() - Method in class jspecview.common.PanelData
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Resets the spectrum to it's original view
- reverse(Coordinate[]) - Static method in class jspecview.common.Coordinate
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- reversePlot() - Method in class jspecview.applet.JSVApplet
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- reversePlot() - Method in class jspecview.applet.JSVAppletPrivate
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Method that can be called from another applet or from javascript that
toggles reversing the plot on a JSVPanel
- reversePlot() - Method in class jspecview.application.MainFrame
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- reversePlot() - Method in interface jspecview.common.JSVAppletInterface
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Method that can be called from another applet or from javascript that
toggles reversing the plot on a JSVPanel
- reversePlotCheckBoxMenuItem - Variable in class jspecview.common.AwtPopupMenu
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- rFill(StringBuffer, String, String) - Static method in class jspecview.util.TextFormat
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- rgb(int, int, int) - Static method in class jspecview.util.ColorUtil
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- rtrim(String, String) - Static method in class jspecview.util.TextFormat
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- run() - Method in class jspecview.common.AwtPanel.RequestThread
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- runScript(String) - Method in class jspecview.applet.JSVApplet
-
- runScript(String) - Method in class jspecview.applet.JSVAppletPrivate
-
- runScript(String) - Method in class jspecview.application.JSpecView
-
for the applet, this is queued
- runScript(String) - Method in class jspecview.application.MainFrame
-
ScriptInterface requires this.
- runScript(String) - Method in interface jspecview.common.JSVAppletInterface
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runs a script in proper order as listed
- runScript(String) - Method in interface jspecview.common.ScriptInterface
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- runScript(String) - Method in interface org.jmol.api.JSVInterface
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- runScriptNow(String) - Method in class jspecview.applet.JSVApplet
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- runScriptNow(String) - Method in class jspecview.applet.JSVAppletPrivate
-
- runScriptNow(String) - Method in class jspecview.application.MainFrame
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- runScriptNow(String) - Method in interface jspecview.common.JSVAppletInterface
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- runScriptNow(ScriptInterface, String) - Static method in class jspecview.common.JSViewer
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