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- c -
calculateCorrelation() :
TOPPMetaProSIP
calculateDecompositionWeightsIsotopicPatterns() :
MetaProSIPDecomposition
calculateGlobalLR() :
TOPPMetaProSIP
calculateIsotopePatternsFor13CRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor13CRangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor15NRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor15NRangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor18ORange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor18ORangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor2HRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor2HRangeOfAveraginePeptide() :
MetaProSIPDecomposition
checkRDependencies() :
RIntegration
clusterSIPPeptides() :
MetaProSIPClustering
computeBinnedCoverage() :
OpenSwathWorkflow
copyBatchTransitions_() :
OpenSwathWorkflow
correlateXICsToMono() :
MetaProSIPXICExtraction
createBinnedPeptideRIAData_() :
MetaProSIPReporting
createCSVReport() :
MetaProSIPReporting
createPeptideCentricCSVReport() :
MetaProSIPReporting
createQualityReport() :
MetaProSIPReporting
- d -
deisotopeAndSingleChargeMSSpectrum() :
Deisotoper
,
SimpleSearchEngine
- e -
extractIncorporationsAtCorrelationMaxima() :
TOPPMetaProSIP
extractIncorporationsAtHeighestDecompositionWeights() :
TOPPMetaProSIP
extractIsotopicIntensities() :
TOPPMetaProSIP
extractPeakSpectrum() :
TOPPMetaProSIP
extractXICs() :
MetaProSIPXICExtraction
extractXICsOfIsotopeTraces() :
MetaProSIPXICExtraction
- f -
filterIsotopicIntensities() :
TOPPMetaProSIP
findApexRT() :
TOPPMetaProSIP
FragmentAnnotationDetail_() :
FragmentAnnotationDetail_
fragmentAnnotationDetailsToString() :
FragmentAnnotationHelper
- g -
getAllFeasibleFragmentAdducts_() :
RNPxlSearch
getAnnotatedImmoniumIon() :
FragmentAnnotationHelper
getArchAsString() :
OpenMSOSInfo
getBestRateScorePair() :
TOPPMetaProSIP
getFeasibleFragmentAdducts_() :
RNPxlSearch
getHighPoints() :
MetaProSIPInterpolation
getModifications_() :
RNPxlSearch
,
SimpleSearchEngine
getNumberOfLabelingElements() :
MetaProSIPDecomposition
getOSAsString() :
OpenMSOSInfo
getPrecursorToFragmentAdducts_() :
RNPxlSearch
getRIAClusterCenter() :
MetaProSIPClustering
- h -
hasBetterScore() :
RNPxlSearch::AnnotatedHit
- i -
isActive() :
OpenSwathTSVWriter
isotopicIntensitiesToSpectrum() :
TOPPMetaProSIP
- m -
main_() :
RNPxlSearch
,
SimpleSearchEngine
,
TOPPMetaProSIP
,
TOPPRNPxl
mergeSpectra() :
TOPPMetaProSIP
- n -
normalizeAdductName_() :
RNPxlSearch
normalizeToMax() :
TOPPMetaProSIP
- o -
OpenMSOSInfo() :
OpenMSOSInfo
OpenSwathTSVWriter() :
OpenSwathTSVWriter
OpenSwathWorkflow() :
OpenSwathWorkflow
operator()() :
RIALess
,
SequenceLess
,
SizeLess
operator<() :
FragmentAnnotationDetail_
,
RNPxlSearch::FragmentAdductDefinition_
operator==() :
FragmentAnnotationDetail_
,
RNPxlSearch::FragmentAdductDefinition_
- p -
performExtraction() :
OpenSwathWorkflow
performRTNormalization() :
OpenSwathWorkflow
plotFilteredSpectra() :
MetaProSIPReporting
plotHeatMap() :
MetaProSIPReporting
plotScoresAndWeights() :
MetaProSIPReporting
postProcessHits_() :
RNPxlSearch
,
SimpleSearchEngine
postScoreHits_() :
RNPxlSearch
prepare_coordinates() :
OpenSwathWorkflow
prepare_coordinates_wrap() :
OpenSwathWorkflow
prepareLine() :
OpenSwathTSVWriter
preprocessSpectra_() :
RNPxlSearch
,
SimpleSearchEngine
- r -
registerOptionsAndFlags_() :
RNPxlSearch
,
SimpleSearchEngine
,
TOPPMetaProSIP
,
TOPPRNPxl
RNPxlSearch() :
RNPxlSearch
RTNormalization() :
OpenSwathWorkflow
- s -
scoreAllChromatograms() :
OpenSwathWorkflow
selectChrom_() :
OpenSwathWorkflow
selectCompoundsForBatch_() :
OpenSwathWorkflow
shiftedImmoniumIonsToString() :
FragmentAnnotationHelper
shiftedMarkerIonsToString() :
FragmentAnnotationHelper
shiftedPrecursorIonsToString() :
FragmentAnnotationHelper
simpleExtractChromatograms() :
OpenSwathWorkflow
SimpleSearchEngine() :
SimpleSearchEngine
- t -
TOPPMetaProSIP() :
TOPPMetaProSIP
TOPPRNPxl() :
TOPPRNPxl
- w -
writeHeader() :
OpenSwathTSVWriter
writeHTML() :
MetaProSIPReporting
writeLines() :
OpenSwathTSVWriter
writePeakIntensities_() :
TOPPMetaProSIP
OpenMS / TOPP release 2.1.0
Documentation generated on Tue Jun 13 2017 06:25:02 using doxygen 1.8.13