Interface | Description |
---|---|
JmolNode | |
LoggerInterface |
Interface used for the logging mechanism.
|
Class | Description |
---|---|
ArrayUtil | |
Base64 | |
BinaryDocument | |
BitSetUtil | |
BoxInfo | |
CifDataReader | |
ColorEncoder | |
ColorUtil | |
CommandHistory |
Implements a queue for a bash-like command history.
|
CompoundDocument | |
ContactPair | |
DCT | |
DefaultLogger |
Default implementation of the logger.
|
Dimension | |
Eigen |
Eigenvalues and eigenvectors of a real matrix.
|
Eigen.EigenSort |
sort from smallest to largest
|
Elements | |
Escape | |
FastBitSet | |
Geodesic |
Consolidated Geodesic from dotsRenderer 3/19/07 Bob Hanson
Constructs a canonical geodesic sphere of unit radius.
|
Huffman | |
Int2IntHash | |
Int2IntHash.Entry | |
JmolEdge | |
JmolMolecule |
an independent class utilizing only org.jmol.api.JmolNode, not org.jmol.modelset.Atom
for use in finding molecules in models and SMILES strings
|
JpegEncoder | |
JpegInfo | |
KfDocument | |
LimitedLineReader | |
Logger |
Logger mechanism.
|
Measure | |
MeshSurface | |
Normix |
Provides quantization of normalized vectors so that shading for
lighting calculations can be handled by a simple index lookup
|
OutputStringBuffer | |
Parser | |
Point3fi |
the Point3fi class allows storage of critical information involving
an atom, picked bond, or measurement point, including:
xyz position
screen position
screen radius (-1 for a simple point)
index (for atoms or for an associated bond that has be picked)
associated modelIndex (for measurement points)
|
Quadric | |
Quaternion | |
Rectangle | |
Shader |
All static functions.
|
SimpleUnitCell |
general-purpose simple unit cell for calculations
and as a super-class of unitcell, which is only part of Symmetry
allows one-dimensional (polymer) and two-dimensional (slab)
periodicity
|
SlowBitSet | |
SurfaceFileTyper | |
TempArray | |
TextFormat | |
TriangleData | |
XmlReader | |
XmlUtil | |
ZipUtil |
Enum | Description |
---|---|
JmolEdge.EnumBondOrder | |
ZipUtil.Encoding |