public interface JmolBioResolver
Modifier and Type | Method and Description |
---|---|
void |
addImplicitHydrogenAtoms(JmolAdapter adapter,
int i) |
Group |
distinguishAndPropagateGroup(Chain chain,
java.lang.String group3,
int seqcode,
int firstAtomIndex,
int maxAtomIndex,
int modelIndex,
int[] specialAtomIndexes,
Atom[] atoms) |
void |
finalizeHydrogens() |
java.lang.String |
fixPropertyValue(java.util.BitSet bsAtoms,
java.lang.String data) |
Model |
getBioModel(ModelSet modelSet,
int modelIndex,
int trajectoryBaseIndex,
java.lang.String jmolData,
java.util.Properties modelProperties,
java.util.Map<java.lang.String,java.lang.Object> modelAuxiliaryInfo) |
void |
initialize(ModelSet modelSet) |
void |
initializeHydrogenAddition(ModelLoader modelSet,
int bondCount) |
void |
setHaveHsAlready(boolean b) |
Group distinguishAndPropagateGroup(Chain chain, java.lang.String group3, int seqcode, int firstAtomIndex, int maxAtomIndex, int modelIndex, int[] specialAtomIndexes, Atom[] atoms)
void initializeHydrogenAddition(ModelLoader modelSet, int bondCount)
void finalizeHydrogens()
void setHaveHsAlready(boolean b)
void addImplicitHydrogenAtoms(JmolAdapter adapter, int i)
void initialize(ModelSet modelSet)
java.lang.String fixPropertyValue(java.util.BitSet bsAtoms, java.lang.String data)