public class XmlChem3dReader extends XmlReader
XmlReader.DummyResolver, XmlReader.JmolXmlHandler
Modifier and Type | Field and Description |
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private java.util.Map<java.lang.String,java.lang.Object> |
moData |
private java.util.List<java.util.Map<java.lang.String,java.lang.Object>> |
orbitals |
atom, chars, implementedAttributes, keepChars, parent
addVibrations, ANGSTROMS_PER_BOHR, applySymmetryToBonds, atomSetCollection, bsFilter, bsModels, calculationType, continuing, desiredModelNumber, desiredVibrationNumber, doApplySymmetry, doc, doCentralize, doCheckUnitCell, doPackUnitCell, doProcessLines, fileName, fileOffset, filePath, fileScaling, filter, filterHetero, getHeader, haveModel, havePartialChargeFilter, htParams, ignoreFileSpaceGroupName, ignoreFileSymmetryOperators, ignoreFileUnitCell, iHaveFractionalCoordinates, iHaveSymmetryOperators, iHaveUnitCell, isBinary, isSequential, isTrajectory, latticeCells, line, matUnitCellOrientation, modelNumber, next, notionalUnitCell, os, prevline, ptLine, ptSupercell, reader, readerName, readMolecularOrbitals, reverseModels, spaceGroup, stateScriptVersionInt, strSupercell, symmetry, templateAtomCount, trajectorySteps, useAltNames, vibrationNumber, viewer
Constructor and Description |
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XmlChem3dReader() |
Modifier and Type | Method and Description |
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protected java.lang.String[] |
getImplementedAttributes() |
void |
processEndElement(java.lang.String uri,
java.lang.String localName,
java.lang.String qName) |
void |
processStartElement(java.lang.String namespaceURI,
java.lang.String localName,
java.lang.String qName,
java.util.Map<java.lang.String,java.lang.String> atts) |
protected void |
processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
java.io.BufferedReader reader,
java.lang.Object xmlReader,
XmlReader.JmolXmlHandler handler) |
applySymmetryAndSetTrajectory, getHandler, initializeReader, parseReaderXML, processXml, setKeepChars
addJmolScript, addPrimitiveLatticeVector, addSites, addSiteScript, appendLoadNote, checkFilter, checkLastModel, checkLine, checkLineForScript, checkLineForScript, clearUnitCell, cloneLastAtomSet, discardLinesUntilBlank, discardLinesUntilContains, discardLinesUntilContains, discardLinesUntilNonBlank, discardLinesUntilStartsWith, doGetModel, doGetVibration, fillDataBlock, fillDataBlock, fillFloatArray, fillFrequencyData, filterAtom, finalizeReader, getElementSymbol, getFortranFormatLengths, getStrings, getSymmetry, getTokens, getTokens, getTokens, getTokensFloat, initializeSymmetry, initializeTrajectoryFile, isLastModel, newAtomSet, parseFloat, parseFloat, parseFloat, parseInt, parseInt, parseInt, parseInt, parseStringInfestedFloatArray, parseToken, parseToken, parseToken, parseTokenNext, parseTrimmed, parseTrimmed, processBinaryDocument, read3Vectors, readData, readLine, readLines, set2D, setAtomCoord, setAtomCoord, setElementAndIsotope, setFilter, setFractionalCoordinates, setIsPDB, setMOData, setPdb, setSpaceGroupName, setSymmetryOperator, setTransform, setUnitCell, setUnitCellItem
private java.util.List<java.util.Map<java.lang.String,java.lang.Object>> orbitals
private java.util.Map<java.lang.String,java.lang.Object> moData
protected java.lang.String[] getImplementedAttributes()
getImplementedAttributes
in class XmlReader
protected void processXml(XmlReader parent, AtomSetCollection atomSetCollection, java.io.BufferedReader reader, java.lang.Object xmlReader, XmlReader.JmolXmlHandler handler)
processXml
in class XmlReader
public void processStartElement(java.lang.String namespaceURI, java.lang.String localName, java.lang.String qName, java.util.Map<java.lang.String,java.lang.String> atts)
processStartElement
in class XmlReader
public void processEndElement(java.lang.String uri, java.lang.String localName, java.lang.String qName)
processEndElement
in class XmlReader