org.jmol.adapter.smarter
Class SmarterJmolAdapter.AtomIterator
java.lang.Object
org.jmol.api.JmolAdapter.AtomIterator
org.jmol.adapter.smarter.SmarterJmolAdapter.AtomIterator
- Enclosing class:
- SmarterJmolAdapter
class SmarterJmolAdapter.AtomIterator
- extends JmolAdapter.AtomIterator
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
atomSetCollection
AtomSetCollection atomSetCollection
iatom
int iatom
atom
Atom atom
atomCount
int atomCount
atoms
Atom[] atoms
SmarterJmolAdapter.AtomIterator
SmarterJmolAdapter.AtomIterator(AtomSetCollection atomSetCollection)
hasNext
public boolean hasNext()
- Specified by:
hasNext
in class JmolAdapter.AtomIterator
getAtomSetIndex
public int getAtomSetIndex()
- Overrides:
getAtomSetIndex
in class JmolAdapter.AtomIterator
getAtomSymmetry
public java.util.BitSet getAtomSymmetry()
- Overrides:
getAtomSymmetry
in class JmolAdapter.AtomIterator
getAtomSite
public int getAtomSite()
- Overrides:
getAtomSite
in class JmolAdapter.AtomIterator
getUniqueID
public java.lang.Object getUniqueID()
- Specified by:
getUniqueID
in class JmolAdapter.AtomIterator
getElementSymbol
public java.lang.String getElementSymbol()
- Overrides:
getElementSymbol
in class JmolAdapter.AtomIterator
getElementNumber
public int getElementNumber()
- Overrides:
getElementNumber
in class JmolAdapter.AtomIterator
getAtomName
public java.lang.String getAtomName()
- Overrides:
getAtomName
in class JmolAdapter.AtomIterator
getFormalCharge
public int getFormalCharge()
- Overrides:
getFormalCharge
in class JmolAdapter.AtomIterator
getPartialCharge
public float getPartialCharge()
- Overrides:
getPartialCharge
in class JmolAdapter.AtomIterator
getEllipsoid
public java.lang.Object[] getEllipsoid()
- Overrides:
getEllipsoid
in class JmolAdapter.AtomIterator
getRadius
public float getRadius()
- Overrides:
getRadius
in class JmolAdapter.AtomIterator
getX
public float getX()
- Specified by:
getX
in class JmolAdapter.AtomIterator
getY
public float getY()
- Specified by:
getY
in class JmolAdapter.AtomIterator
getZ
public float getZ()
- Specified by:
getZ
in class JmolAdapter.AtomIterator
getVectorX
public float getVectorX()
- Overrides:
getVectorX
in class JmolAdapter.AtomIterator
getVectorY
public float getVectorY()
- Overrides:
getVectorY
in class JmolAdapter.AtomIterator
getVectorZ
public float getVectorZ()
- Overrides:
getVectorZ
in class JmolAdapter.AtomIterator
getBfactor
public float getBfactor()
- Overrides:
getBfactor
in class JmolAdapter.AtomIterator
getOccupancy
public int getOccupancy()
- Overrides:
getOccupancy
in class JmolAdapter.AtomIterator
getIsHetero
public boolean getIsHetero()
- Overrides:
getIsHetero
in class JmolAdapter.AtomIterator
getAtomSerial
public int getAtomSerial()
- Overrides:
getAtomSerial
in class JmolAdapter.AtomIterator
getChainID
public char getChainID()
- Overrides:
getChainID
in class JmolAdapter.AtomIterator
getAlternateLocationID
public char getAlternateLocationID()
- Overrides:
getAlternateLocationID
in class JmolAdapter.AtomIterator
getGroup3
public java.lang.String getGroup3()
- Overrides:
getGroup3
in class JmolAdapter.AtomIterator
getSequenceNumber
public int getSequenceNumber()
- Overrides:
getSequenceNumber
in class JmolAdapter.AtomIterator
getInsertionCode
public char getInsertionCode()
- Overrides:
getInsertionCode
in class JmolAdapter.AtomIterator