Trees | Indices | Help |
|
---|
|
object --+ | SigFactory
SigFactory's are used by creating one, setting the relevant parameters, then calling the GetSignature() method each time a signature is required.
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
Inherited from |
|
|||
Inherited from |
|
x.__init__(...) initializes x; see help(type(x)) for signature
|
returns text with a description of the bit **Arguments** - bitIdx: an integer bit index - includeBins: (optional) if nonzero, information about the bins will be included as well - fullPage: (optional) if nonzero, html headers and footers will be included (so as to make the output a complete page) **Returns** a string with the HTML |
returns a text description of the bit **Arguments** - bitIdx: an integer bit index **Returns** a string |
returns the index for a pharmacophore described using a set of feature indices and distances **Arguments*** - featIndices: a sequence of feature indices - dists: a sequence of distance between the features, only the unique distances should be included, and they should be in the order defined in Utils. - sortIndices : sort the indices **Returns** the integer bit index |
returns information about the given bit **Arguments** - idx: the bit index to be considered **Returns** a 3-tuple: 1) the number of points in the pharmacophore 2) the proto-pharmacophore (tuple of pattern indices) 3) the scaffold (tuple of distance indices) |
Initializes internal parameters. This **must** be called after making any changes to the signature parameters |
OBSOLETE: this has been rewritten in C++ Internal use only Returns the index of a bin defined by a set of distances. **Arguments** - dists: a sequence of distances (not binned) - bins: a sorted sequence of distance bins (2-tuples) - scaffolds: a list of possible scaffolds (bin combinations) **Returns** an integer bin index **Note** the value returned here is not an index in the overall signature. It is, rather, an offset of a scaffold in the possible combinations of distance bins for a given proto-pharmacophore. |
Trees | Indices | Help |
|
---|
Generated by Epydoc 3.0.1 on Thu Aug 25 09:59:04 2016 | http://epydoc.sourceforge.net |