- table (MDAnalysis.analysis.hbonds.hbond_analysis.HydrogenBondAnalysis attribute)
- TABLE_ATOMELEMENTS (in module MDAnalysis.topology.tables)
- TABLE_MASSES (in module MDAnalysis.topology.tables)
- tell() (MDAnalysis.lib.util.NamedStream method)
- temperature (MDAnalysis.coordinates.TRZ.Timestep attribute)
- time (MDAnalysis.coordinates.base.ChainReader attribute)
- (MDAnalysis.coordinates.DCD.DCDReader attribute)
- (MDAnalysis.coordinates.DCD.Timestep attribute)
- (MDAnalysis.coordinates.LAMMPS.DATAReader attribute)
- (MDAnalysis.coordinates.LAMMPS.DCDReader attribute)
- (MDAnalysis.coordinates.TRZ.Timestep attribute)
- (MDAnalysis.coordinates.base.Timestep attribute)
- (MDAnalysis.coordinates.xdrfile.TRR.TRRReader attribute)
- (MDAnalysis.coordinates.xdrfile.TRR.Timestep attribute)
- (MDAnalysis.coordinates.xdrfile.XTC.Timestep attribute)
- (MDAnalysis.coordinates.xdrfile.XTC.XTCReader attribute)
- Timeseries (class in MDAnalysis.core.Timeseries)
- timeseries (MDAnalysis.analysis.hbonds.hbond_analysis.HydrogenBondAnalysis attribute)
- timeseries() (MDAnalysis.coordinates.DCD.DCDReader method)
- (MDAnalysis.coordinates.LAMMPS.DCDReader method)
- TimeseriesCollection (class in MDAnalysis.core.Timeseries)
- Timestep (class in MDAnalysis.coordinates.base)
- (class in MDAnalysis.coordinates.DCD)
- (class in MDAnalysis.coordinates.TRJ)
- (class in MDAnalysis.coordinates.TRZ), [1]
- (class in MDAnalysis.coordinates.xdrfile.TRR)
- (class in MDAnalysis.coordinates.xdrfile.XTC)
- (class in MDAnalysis.coordinates.xdrfile.core)
- timesteps (MDAnalysis.analysis.hbonds.hbond_analysis.HydrogenBondAnalysis attribute)
- timesteps_by_type() (MDAnalysis.analysis.hbonds.hbond_analysis.HydrogenBondAnalysis method)
- timeUnit_factor (in module MDAnalysis.units)
- TITLE() (MDAnalysis.coordinates.PDB.PrimitivePDBWriter method)
- (MDAnalysis.coordinates.PDBQT.PDBQTWriter method)
- to_indices() (MDAnalysis.core.topologyobjects.TopologyGroup method)
- to_path() (MDAnalysis.analysis.psa.Path method)
- topDict (MDAnalysis.core.topologyobjects.TopologyGroup attribute)
- TopologyDict (class in MDAnalysis.core.topologyobjects)
- TopologyGroup (class in MDAnalysis.core.topologyobjects)
- TopologyObject (class in MDAnalysis.core.topologyobjects)
- TopologyReader (class in MDAnalysis.topology.base)
- TOPParser (class in MDAnalysis.topology.TOPParser)
- tors() (in module MDAnalysis.analysis.nuclinfo)
- tors_alpha() (in module MDAnalysis.analysis.nuclinfo)
- tors_beta() (in module MDAnalysis.analysis.nuclinfo)
- tors_chi() (in module MDAnalysis.analysis.nuclinfo)
- tors_delta() (in module MDAnalysis.analysis.nuclinfo)
- tors_eps() (in module MDAnalysis.analysis.nuclinfo)
- tors_gamma() (in module MDAnalysis.analysis.nuclinfo)
- tors_zeta() (in module MDAnalysis.analysis.nuclinfo)
- total_charge() (MDAnalysis.core.AtomGroup.AtomGroup method)
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- total_energy (MDAnalysis.coordinates.TRZ.Timestep attribute)
- total_mass() (MDAnalysis.core.AtomGroup.AtomGroup method)
- totalCharge() (MDAnalysis.core.AtomGroup.AtomGroup method)
- totalMass() (MDAnalysis.core.AtomGroup.AtomGroup method)
- totaltime (MDAnalysis.coordinates.DCD.DCDReader attribute)
- (MDAnalysis.coordinates.LAMMPS.DATAReader attribute)
- (MDAnalysis.coordinates.LAMMPS.DCDReader attribute)
- (MDAnalysis.coordinates.xdrfile.TRR.TRRReader attribute)
- (MDAnalysis.coordinates.xdrfile.XTC.XTCReader attribute)
- tp (MDAnalysis.topology.tpr.obj.Atom attribute)
- TPRParser (class in MDAnalysis.topology.TPRParser)
- TPRTopology (class in MDAnalysis.topology.tpr.obj)
- TpxHeader (class in MDAnalysis.topology.tpr.obj)
- trajectory (MDAnalysis.core.AtomGroup.Universe attribute)
- transform() (MDAnalysis.core.AtomGroup.AtomGroup method)
- transform_RtoS() (in module MDAnalysis.lib.distances), [1]
- transform_StoR() (in module MDAnalysis.lib.distances), [1]
- translate() (MDAnalysis.core.AtomGroup.AtomGroup method)
- translation_from_matrix() (in module MDAnalysis.lib.transformations)
- triclinic_box() (in module MDAnalysis.lib.mdamath), [1]
- triclinic_dimensions (MDAnalysis.coordinates.base.Timestep attribute)
- (MDAnalysis.coordinates.DCD.Timestep attribute)
- (MDAnalysis.coordinates.xdrfile.TRR.Timestep attribute)
- (MDAnalysis.coordinates.xdrfile.XTC.Timestep attribute)
- triclinic_vectors() (in module MDAnalysis.lib.mdamath), [1]
- TRJReader (class in MDAnalysis.coordinates.TRJ)
- TrjReader (class in MDAnalysis.coordinates.xdrfile.core)
- TrjWriter (class in MDAnalysis.coordinates.xdrfile.core)
- TRRReader (class in MDAnalysis.coordinates.xdrfile.TRR)
- TRRWriter (class in MDAnalysis.coordinates.xdrfile.TRR)
- truncate() (MDAnalysis.lib.util.NamedStream method)
- TRZReader (class in MDAnalysis.coordinates.TRZ), [1]
- TRZWriter (class in MDAnalysis.coordinates.TRZ), [1]
- ts (MDAnalysis.core.AtomGroup.AtomGroup attribute)
- type (MDAnalysis.core.AtomGroup.Atom attribute)
- (MDAnalysis.core.topologyobjects.TopologyObject attribute)
- (MDAnalysis.topology.tpr.obj.Atoms attribute)
- typeB (MDAnalysis.topology.tpr.obj.Atom attribute)
- (MDAnalysis.topology.tpr.obj.Atoms attribute)
- types (MDAnalysis.core.AtomGroup.AtomGroup attribute)
- types() (MDAnalysis.core.topologyobjects.TopologyGroup method)
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