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src
shogun
structure
IntronList.h
浏览该文件的文档.
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/*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 3 of the License, or
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* (at your option) any later version.
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*
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* Written (W) 2009 Jonas Behr
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* Copyright (C) 2009 Fraunhofer Institute FIRST and Max-Planck-Society
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*/
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#ifndef __INTRON_LIST__
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#define __INTRON_LIST__
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#include <
shogun/lib/common.h
>
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#include <
shogun/base/SGObject.h
>
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namespace
shogun
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{
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class
CIntronList
:
public
CSGObject
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{
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public
:
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CIntronList
();
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virtual
~CIntronList
();
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void
init_list
(int32_t* all_pos, int32_t len);
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void
read_introns
(int32_t* start_pos, int32_t* end_pos, int32_t* quality, int32_t len);
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void
get_intron_support
(int32_t* values, int32_t from_pos, int32_t to_pos);
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virtual
const
char
*
get_name
()
const
{
return
"IntronList"
; }
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protected
:
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int32_t
m_length
;
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int32_t*
m_all_pos
;
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int32_t**
m_intron_list
;
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int32_t**
m_quality_list
;
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};
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}
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#endif
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